Bayesian Learning
Inferring Optical Tissue Properties from Photoplethysmography using Hybrid Amortized Inference
Behrmann, Jens, Cervera, Maria R., Wehenkel, Antoine, Miller, Andrew C., Cerussi, Albert, Jain, Pranay, Venugopal, Vivek, Yan, Shijie, Sapiro, Guillermo, Pegolotti, Luca, Jacobsen, Jörn-Henrik
Smart wearables enable continuous tracking of established biomarkers such as heart rate, heart rate variability, and blood oxygen saturation via photoplethysmography (PPG). Beyond these metrics, PPG waveforms contain richer physiological information, as recent deep learning (DL) studies demonstrate. However, DL models often rely on features with unclear physiological meaning, creating a tension between predictive power, clinical interpretability, and sensor design. We address this gap by introducing PPGen, a biophysical model that relates PPG signals to interpretable physiological and optical parameters. Building on PPGen, we propose hybrid amortized inference (HAI), enabling fast, robust, and scalable estimation of relevant physiological parameters from PPG signals while correcting for model misspecification. In extensive in-silico experiments, we show that HAI can accurately infer physiological parameters under diverse noise and sensor conditions. Our results illustrate a path toward PPG models that retain the fidelity needed for DL-based features while supporting clinical interpretation and informed hardware design.
Uniform-in-time convergence bounds for Persistent Contrastive Divergence Algorithms
Oliva, Paul Felix Valsecchi, Akyildiz, O. Deniz, Duncan, Andrew
We propose a continuous-time formulation of persistent contrastive divergence (PCD) for maximum likelihood estimation (MLE) of unnormalised densities. Our approach expresses PCD as a coupled, multiscale system of stochastic differential equations (SDEs), which perform optimisation of the parameter and sampling of the associated parametrised density, simultaneously. From this novel formulation, we are able to derive explicit bounds for the error between the PCD iterates and the MLE solution for the model parameter. This is made possible by deriving uniform-in-time (UiT) bounds for the difference in moments between the multiscale system and the averaged regime. An efficient implementation of the continuous-time scheme is introduced, leveraging a class of explicit, stable intregators, stochastic orthogonal Runge-Kutta Chebyshev (S-ROCK), for which we provide explicit error estimates in the long-time regime. This leads to a novel method for training energy-based models (EBMs) with explicit error guarantees.
Predictively Oriented Posteriors
McLatchie, Yann, Cherief-Abdellatif, Badr-Eddine, Frazier, David T., Knoblauch, Jeremias
We advocate for a new statistical principle that combines the most desirable aspects of both parameter inference and density estimation. This leads us to the predictively oriented (PrO) posterior, which expresses uncertainty as a consequence of predictive ability. Doing so leads to inferences which predictively dominate both classical and generalised Bayes posterior predictive distributions: up to logarithmic factors, PrO posteriors converge to the predictively optimal model average at rate $n^{-1/2}$. Whereas classical and generalised Bayes posteriors only achieve this rate if the model can recover the data-generating process, PrO posteriors adapt to the level of model misspecification. This means that they concentrate around the true model at rate $n^{1/2}$ in the same way as Bayes and Gibbs posteriors if the model can recover the data-generating distribution, but do \textit{not} concentrate in the presence of non-trivial forms of model misspecification. Instead, they stabilise towards a predictively optimal posterior whose degree of irreducible uncertainty admits an interpretation as the degree of model misspecification -- a sharp contrast to how Bayesian uncertainty and its existing extensions behave. Lastly, we show that PrO posteriors can be sampled from by evolving particles based on mean field Langevin dynamics, and verify the practical significance of our theoretical developments on a number of numerical examples.
A theoretical framework for M-posteriors: frequentist guarantees and robustness properties
Marusic, Juraj, Medina, Marco Avella, Rush, Cynthia
We provide a theoretical framework for a wide class of generalized posteriors that can be viewed as the natural Bayesian posterior counterpart of the class of M-estimators in the frequentist world. We call the members of this class M-posteriors and show that they are asymptotically normally distributed under mild conditions on the M-estimation loss and the prior. In particular, an M-posterior contracts in probability around a normal distribution centered at an M-estimator, showing frequentist consistency and suggesting some degree of robustness depending on the reference M-estimator. We formalize the robustness properties of the M-posteriors by a new characterization of the posterior influence function and a novel definition of breakdown point adapted for posterior distributions. We illustrate the wide applicability of our theory in various popular models and illustrate their empirical relevance in some numerical examples.
LVTINO: LAtent Video consisTency INverse sOlver for High Definition Video Restoration
Spagnoletti, Alessio, Almansa, Andrés, Pereyra, Marcelo
Computational imaging methods increasingly rely on powerful generative diffusion models to tackle challenging image restoration tasks. In particular, state-of-the-art zero-shot image inverse solvers leverage distilled text-to-image latent diffusion models (LDMs) to achieve unprecedented accuracy and perceptual quality with high computational efficiency. However, extending these advances to high-definition video restoration remains a significant challenge, due to the need to recover fine spatial detail while capturing subtle temporal dependencies. Consequently, methods that naively apply image-based LDM priors on a frame-by-frame basis often result in temporally inconsistent reconstructions. We address this challenge by leveraging recent advances in Video Consistency Models (VCMs), which distill video latent diffusion models into fast generators that explicitly capture temporal causality. Building on this foundation, we propose LVTINO, the first zero-shot or plug-and-play inverse solver for high definition video restoration with priors encoded by VCMs. Our conditioning mechanism bypasses the need for automatic differentiation and achieves state-of-the-art video reconstruction quality with only a few neural function evaluations, while ensuring strong measurement consistency and smooth temporal transitions across frames. Extensive experiments on a diverse set of video inverse problems show significant perceptual improvements over current state-of-the-art methods that apply image LDMs frame by frame, establishing a new benchmark in both reconstruction fidelity and computational efficiency.
Continuously Augmented Discrete Diffusion model for Categorical Generative Modeling
Zheng, Huangjie, Gong, Shansan, Zhang, Ruixiang, Chen, Tianrong, Gu, Jiatao, Zhou, Mingyuan, Jaitly, Navdeep, Zhang, Yizhe
Standard discrete diffusion models treat all unobserved states identically by mapping them to an absorbing [MASK] token. This creates an 'information void' where semantic information that could be inferred from unmasked tokens is lost between denoising steps. We introduce Continuously Augmented Discrete Diffusion (CADD), a framework that augments the discrete state space with a paired diffusion in a continuous latent space. This yields graded, gradually corrupted states in which masked tokens are represented by noisy yet informative latent vectors rather than collapsed 'information voids'. At each reverse step, CADD may leverage the continuous latent as a semantic hint to guide discrete denoising. The design is clean and compatible with existing discrete diffusion training. At sampling time, the strength and choice of estimator for the continuous latent vector enables a controlled trade-off between mode-coverage (generating diverse outputs) and mode-seeking (generating contextually precise outputs) behaviors. Empirically, we demonstrate CADD improves generative quality over mask-based diffusion across text generation, image synthesis, and code modeling, with consistent gains on both qualitative and quantitative metrics against strong discrete baselines.
Differential Information Distribution: A Bayesian Perspective on Direct Preference Optimization
Won, Yunjae, Lee, Hyunji, Hwang, Hyeonbin, Seo, Minjoon
Direct Preference Optimization (DPO) has been widely used for aligning language models with human preferences in a supervised manner. However, several key questions remain unresolved: the rationale behind its log-ratio reward, how the statistical structure of preference datasets shapes its training dynamics, and how those dynamics impact downstream capabilities. We approach these questions from a Bayesian perspective, interpreting the goal of preference optimization as learning the differential information required to update a reference policy into a target policy. To formalize this view, we introduce the Differential Information Distribution (DID), defined as the distribution over samples that carry the Bayesian evidence required to update policies. We introduce three complementary insights by viewing preference optimization through the DID. First, we find that DPO's log-ratio reward is uniquely justified when preferences encode the Differential Information needed to update a reference policy into the target policy. Second, we discuss how commonly observed training dynamics in DPO, including changes in log-likelihood and policy exploration, stem from a power-law DID relationship. Finally, we analyze how training dynamics influence downstream performance using the entropy of DID, a principled measure of uncertainty in the learned information. We observe that learning high-entropy DID improves open-ended instruction-following, while low-entropy DID benefits knowledge-intensive QA. Taken together, our results show that DPO's reward design, training dynamics, and downstream capabilities all emerge as natural consequences of learning Differential Information, offering both a principled theoretical foundation and practical guidance for preference-based alignment.
DAG DECORation: Continuous Optimization for Structure Learning under Hidden Confounding
Pal, Samhita, O'quinn, James, Aryan, Kaveh, Pua, Heather, Long, James P., Asiaee, Amir
We study structure learning for linear Gaussian SEMs in the presence of latent confounding. Existing continuous methods excel when errors are independent, while deconfounding-first pipelines rely on pervasive factor structure or nonlinearity. We propose \textsc{DECOR}, a single likelihood-based and fully differentiable estimator that jointly learns a DAG and a correlated noise model. Our theory gives simple sufficient conditions for global parameter identifiability: if the mixed graph is bow free and the noise covariance has a uniform eigenvalue margin, then the map from $(\B,\OmegaMat)$ to the observational covariance is injective, so both the directed structure and the noise are uniquely determined. The estimator alternates a smooth-acyclic graph update with a convex noise update and can include a light bow complementarity penalty or a post hoc reconciliation step. On synthetic benchmarks that vary confounding density, graph density, latent rank, and dimension with $n
Large-Scale Bayesian Causal Discovery with Interventional Data
Han, Seong Woo, Vo, Daniel Duy, Brown, Brielin C.
Inferring the causal relationships among a set of variables in the form of a directed acyclic graph (DAG) is an important but notoriously challenging problem. Recently, advancements in high-throughput genomic perturbation screens have inspired development of methods that leverage interventional data to improve model identification. However, existing methods still suffer poor performance on large-scale tasks and fail to quantify uncertainty. Here, we propose Interventional Bayesian Causal Discovery (IBCD), an empirical Bayesian framework for causal discovery with interventional data. Our approach models the likelihood of the matrix of total causal effects, which can be approximated by a matrix normal distribution, rather than the full data matrix. We place a spike-and-slab horseshoe prior on the edges and separately learn data-driven weights for scale-free and Erdős-Rényi structures from observational data, treating each edge as a latent variable to enable uncertainty-aware inference. Through extensive simulation, we show that IBCD achieves superior structure recovery compared to existing baselines. We apply IBCD to CRISPR perturbation (Perturb-seq) data on 521 genes, demonstrating that edge posterior inclusion probabilities enable identification of robust graph structures.
Robust Classification of Oral Cancer with Limited Training Data
Sonawane, Akshay Bhagwan, Swamikannan, Lena D., Tamil, Lakshman
Oral cancer ranks among the most prevalent cancers globally, with a particularly high mortality rate in regions lacking adequate healthcare access. Early diagnosis is crucial for reducing mortality; however, challenges persist due to limited oral health programs, inadequate infrastructure, and a shortage of healthcare practitioners. Conventional deep learning models, while promising, often rely on point estimates, leading to overconfidence and reduced reliability. Critically, these models require large datasets to mitigate overfitting and ensure generalizability, an unrealistic demand in settings with limited training data. To address these issues, we propose a hybrid model that combines a convolutional neural network (CNN) with Bayesian deep learning for oral cancer classification using small training sets. This approach employs variational inference to enhance reliability through uncertainty quantification. The model was trained on photographic color images captured by smartphones and evaluated on three distinct test datasets. The proposed method achieved 94% accuracy on a test dataset with a distribution similar to that of the training data, comparable to traditional CNN performance. Notably, for real-world photographic image data, despite limitations and variations differing from the training dataset, the proposed model demonstrated superior generalizability, achieving 88% accuracy on diverse datasets compared to 72.94% for traditional CNNs, even with a smaller dataset. Confidence analysis revealed that the model exhibits low uncertainty (high confidence) for correctly classified samples and high uncertainty (low confidence) for misclassified samples. These results underscore the effectiveness of Bayesian inference in data-scarce environments in enhancing early oral cancer diagnosis by improving model reliability and generalizability.