We present an algorithm that samples the hypothesis space of kernel classifiers. Given a uniform prior over normalised weight vectors and a likelihood based on a model of label noise leads to a piecewise constant posterior that can be sampled by the kernel Gibbs sampler (KGS). The KGS is a Markov Chain Monte Carlo method that chooses a random direction in parameter space and samples from the resulting piecewise constant density along the line chosen. The KGS can be used as an analytical tool for the exploration of Bayesian transduction, Bayes point machines, active learning, and evidence-based model selection on small data sets that are contaminated with label noise. For a simple toy example we demonstrate experimentally how a Bayes point machine based on the KGS outperforms an SVM that is incapable of taking into account label noise. 1 Introduction Two great ideas have dominated recent developments in machine learning: the application of kernel methods and the popularisation of Bayesian inference.

Variational approximations are becoming a widespread tool for Bayesian learning of graphical models. We provide some theoretical results for the variational updates in a very general family of conjugate-exponential graphical models. We show how the belief propagation and the junction tree algorithms can be used in the inference step of variational Bayesian learning. Applying these results to the Bayesian analysis of linear-Gaussian state-space models we obtain a learning procedure that exploits the Kalman smoothing propagation, while integrating over all model parameters. We demonstrate how this can be used to infer the hidden state dimensionality of the state-space model in a variety of synthetic problems and one real high-dimensional data set. 1 Introduction Bayesian approaches to machine learning have several desirable properties.

Exact inference in large, richly connected noisy-OR networks is intractable, and most approximate inference algorithms tend to concentrate on a small number of most probable configurations of the hidden variables under the posterior. We presented an "inclusive" variational method for bipartite noisy-OR networks that favors including all probable configurations, at the cost of including some improbable configurations. The method fits a tree to the posterior distribution sequentially, i.e., one observation at a time. Results on an ensemble of QMR-DT type networks show that the method performs better than local probability propagation and a variational upper bound for ranking most probable diseases.

In this paper we will discuss a variational mean-field theory and its application to BNs, sigmoidal BNs in particular. We present a variational derivation of the mean-field theory, proposed by Plefka[2].

The Bayesian paradigm apparently only sometimes gives rise to Occam's Razor; at other times very large models perform well. We give simple examples of both kinds of behaviour. The two views are reconciled when measuring complexity of functions, rather than of the machinery used to implement them. We analyze the complexity of functions for some linear in the parameter models that are equivalent to Gaussian Processes, and always find Occam's Razor at work. 1 Introduction Occam's Razor is a well known principle of "parsimony of explanations" which is influential in scientific thinking in general and in problems of statistical inference in particular. In this paper we review its consequences for Bayesian statistical models, where its behaviour can be easily demonstrated and quantified.

Learning of a smooth but nonparametric probability density can be regularized using methods of Quantum Field Theory. We implement a field theoretic prior numerically, test its efficacy, and show that the free parameter of the theory (,smoothness scale') can be determined self consistently by the data; this forms an infinite dimensional generalization of the MDL principle. Finally, we study the implications of one's choice of the prior and the parameterization and conclude that the smoothness scale determination makes density estimation very weakly sensitive to the choice of the prior, and that even wrong choices can be advantageous for small data sets. One of the central problems in learning is to balance'goodness of fit' criteria against the complexity of models. An important development in the Bayesian approach was thus the realization that there does not need to be any extra penalty for model complexity: if we compute the total probability that data are generated by a model, there is a factor from the volume in parameter space-the'Occam factor' -that discriminates against models with more parameters [1, 2].

In this paper, we derive a second order mean field theory for directed graphical probability models. By using an information theoretic argument it is shown how this can be done in the absense of a partition function. This method is a direct generalisation of the well-known TAP approximation for Boltzmann Machines. In a numerical example, it is shown that the method greatly improves the first order mean field approximation. For a restricted class of graphical models, so-called single overlap graphs, the second order method has comparable complexity to the first order method. For sigmoid belief networks, the method is shown to be particularly fast and effective.

Jensen's inequality is a powerful mathematical tool and one of the workhorses in statistical learning. Its applications therein include the EM algorithm, Bayesian estimation and Bayesian inference. Jensen computes simple lower bounds on otherwise intractable quantities such as products of sums and latent log-likelihoods. This simplification then permits operations like integration and maximization. Quite often (i.e. in discriminative learning) upper bounds are needed as well. We derive and prove an efficient analytic inequality that provides such variational upper bounds. This inequality holds for latent variable mixtures of exponential family distributions and thus spans a wide range of contemporary statistical models. We also discuss applications of the upper bounds including maximum conditional likelihood, large margin discriminative models and conditional Bayesian inference. Convergence, efficiency and prediction results are shown.

We present a bound on the generalisation error of linear classifiers in terms of a refined margin quantity on the training set. The result is obtained in a PAC-Bayesian framework and is based on geometrical arguments in the space of linear classifiers. The new bound constitutes an exponential improvement of the so far tightest margin bound by Shawe-Taylor et al. [8] and scales logarithmically in the inverse margin. Even in the case of less training examples than input dimensions sufficiently large margins lead to nontrivial bound values and - for maximum margins - to a vanishing complexity term. Furthermore, the classical margin is too coarse a measure for the essential quantity that controls the generalisation error: the volume ratio between the whole hypothesis space and the subset of consistent hypotheses.

How should we decide among competing explanations of a cognitive process given limited observations? The problem of model selection is at the heart of progress in cognitive science. In this paper, Minimum Description Length (MDL) is introduced as a method for selecting among computational models of cognition. We also show that differential geometry provides an intuitive understanding of what drives model selection in MDL. Finally, adequacy of MDL is demonstrated in two areas of cognitive modeling.