Bayesian Networks (BN) provide robust probabilistic methods of reasoning under uncertainty, but despite their formal grounds are strictly based on the notion of conditional dependence, not much attention has been paid so far to their use in dependability analysis. The aim of this paper is to propose BN as a suitable tool for dependability analysis, by challenging the formalism with basic issues arising in dependability tasks. We will discuss how both modeling and analysis issues can be naturally dealt with by BN. Moreover, we will show how some limitations intrinsic to combinatorial dependability methods such as Fault Trees can be overcome using BN. This will be pursued through the study of a real-world example concerning the reliability analysis of a redundant digital Programmable Logic Controller (PLC) with majority voting 2:3

In previous work, we pointed out the limitations of standard Bayesian networks as a modeling framework for large, complex domains. We proposed a new, richly structured modeling language, {em Object-oriented Bayesian Netorks}, that we argued would be able to deal with such domains. However, it turns out that OOBNs are not expressive enough to model many interesting aspects of complex domains: the existence of specific named objects, arbitrary relations between objects, and uncertainty over domain structure. These aspects are crucial in real-world domains such as battlefield awareness. In this paper, we present SPOOK, an implemented system that addresses these limitations. SPOOK implements a more expressive language that allows it to represent the battlespace domain naturally and compactly. We present a new inference algorithm that utilizes the model structure in a fundamental way, and show empirically that it achieves orders of magnitude speedup over existing approaches.

Graphical models based on conditional independence support concise encodings of the subjective belief of a single agent. A natural question is whether the consensus belief of a group of agents can be represented with equal parsimony. We prove, under relatively mild assumptions, that even if everyone agrees on a common graph topology, no method of combining beliefs can maintain that structure. Even weaker conditions rule out local aggregation within conditional probability tables. On a more positive note, we show that if probabilities are combined with the logarithmic opinion pool (LogOP), then commonly held Markov independencies are maintained. This suggests a straightforward procedure for constructing a consensus Markov network. We describe an algorithm for computing the LogOP with time complexity comparable to that of exact Bayesian inference.

Influence diagrams serve as a powerful tool for modelling symmetric decision problems. When solving an influence diagram we determine a set of strategies for the decisions involved. A strategy for a decision variable is in principle a function over its past. However, some of the past may be irrelevant for the decision, and for computational reasons it is important not to deal with redundant variables in the strategies. We show that current methods (e.g. the "Decision Bayes-ball" algorithm by Shachter UAI98) do not determine the relevant past, and we present a complete algorithm. Actually, this paper takes a more general outset: When formulating a decision scenario as an influence diagram, a linear temporal ordering of the decisions variables is required. This constraint ensures that the decision scenario is welldefined. However, the structure of a decision scenario often yields certain decisions conditionally independent, and it is therefore unnecessary to impose a linear temporal ordering on the decisions. In this paper we deal with partial influence diagrams i.e. influence diagrams with only a partial temporal ordering specified. We present a set of conditions which are necessary and sufficient to ensure that a partial influence diagram is welldefined. These conditions are used as a basis for the construction of an algorithm for determining whether or not a partial influence diagram is welldefined.

A major problem for the learning of Bayesian networks (BNs) is the exponential number of parameters needed for conditional probability tables. Recent research reduces this complexity by modeling local structure in the probability tables. We examine the use of log-linear local models. While log-linear models in this context are not new (Whittaker, 1990; Buntine, 1991; Neal, 1992; Heckerman and Meek, 1997), for structure learning they are generally subsumed under a naive Bayes model. We describe an alternative interpretation, and use a Minimum Message Length (MML) (Wallace, 1987) metric for structure learning of networks exhibiting causal independence, which we term first-order networks (FONs). We also investigate local model selection on a node-by-node basis.

This paper describes stochastic search approaches, including a new stochastic algorithm and an adaptive mutation operator, for learning Bayesian networks from incomplete data. This problem is characterized by a huge solution space with a highly multimodal landscape. State-of-the-art approaches all involve using deterministic approaches such as the expectation-maximization algorithm. These approaches are guaranteed to find local maxima, but do not explore the landscape for other modes. Our approach evolves structure and the missing data. We compare our stochastic algorithms and show they all produce accurate results.

Recently, researchers have demonstrated that "loopy belief propagation" - the use of Pearl's polytree algorithm in a Bayesian network with loops - can perform well in the context of error-correcting codes. The most dramatic instance of this is the near Shannon-limit performance of "Turbo Codes" - codes whose decoding algorithm is equivalent to loopy belief propagation in a chain-structured Bayesian network. In this paper we ask: is there something special about the error-correcting code context, or does loopy propagation work as an approximate inference scheme in a more general setting? We compare the marginals computed using loopy propagation to the exact ones in four Bayesian network architectures, including two real-world networks: ALARM and QMR. We find that the loopy beliefs often converge and when they do, they give a good approximation to the correct marginals. However, on the QMR network, the loopy beliefs oscillated and had no obvious relationship to the correct posteriors. We present some initial investigations into the cause of these oscillations, and show that some simple methods of preventing them lead to the wrong results.

We show how to use a variational approximation to the logistic function to perform approximate inference in Bayesian networks containing discrete nodes with continuous parents. Essentially, we convert the logistic function to a Gaussian, which facilitates exact inference, and then iteratively adjust the variational parameters to improve the quality of the approximation. We demonstrate experimentally that this approximation is much faster than sampling, but comparable in accuracy. We also introduce a simple new technique for handling evidence, which allows us to handle arbitrary distributions on observed nodes, as well as achieving a significant speedup in networks with discrete variables of large cardinality.

In this paper we present a new Bayesian network model for classification that combines the naive-Bayes (NB) classifier and the finite-mixture (FM) classifier. The resulting classifier aims at relaxing the strong assumptions on which the two component models are based, in an attempt to improve on their classification performance, both in terms of accuracy and in terms of calibration of the estimated probabilities. The proposed classifier is obtained by superimposing a finite mixture model on the set of feature variables of a naive Bayes model. We present experimental results that compare the predictive performance on real datasets of the new classifier with the predictive performance of the NB classifier and the FM classifier.

As observations and student models become complex, educational assessments that exploit advances in technology and cognitive psychology can outstrip familiar testing models and analytic methods. Within the Portal conceptual framework for assessment design, Bayesian inference networks (BINs) record beliefs about students' knowledge and skills, in light of what they say and do. Joining evidence model BIN fragments- which contain observable variables and pointers to student model variables - to the student model allows one to update belief about knowledge and skills as observations arrive. Markov Chain Monte Carlo (MCMC) techniques can estimate the required conditional probabilities from empirical data, supplemented by expert judgment or substantive theory. Details for the special cases of item response theory (IRT) and multivariate latent class modeling are given, with a numerical example of the latter.