Many feature subset selection (FSS) algorithms have been proposed, but not all of them are appropriate for a given feature selection problem. At the same time, so far there is rarely a good way to choose appropriate FSS algorithms for the problem at hand. Thus, FSS algorithm automatic recommendation is very important and practically useful. In this paper, a meta learning based FSS algorithm automatic recommendation method is presented. The proposed method first identifies the data sets that are most similar to the one at hand by the k-nearest neighbor classification algorithm, and the distances among these data sets are calculated based on the commonly-used data set characteristics. Then, it ranks all the candidate FSS algorithms according to their performance on these similar data sets, and chooses the algorithms with best performance as the appropriate ones. The performance of the candidate FSS algorithms is evaluated by a multi-criteria metric that takes into account not only the classification accuracy over the selected features, but also the runtime of feature selection and the number of selected features. The proposed recommendation method is extensively tested on 115 real world data sets with 22 well-known and frequently-used different FSS algorithms for five representative classifiers. The results show the effectiveness of our proposed FSS algorithm recommendation method.

A mean field variational Bayes approach to support vector machines (SVMs) using the latent variable representation on Polson & Scott (2012) is presented. This representation allows circumvention of many of the shortcomings associated with classical SVMs including automatic penalty parameter selection, the ability to handle dependent samples, missing data and variable selection. We demonstrate on simulated and real datasets that our approach is easily extendable to non-standard situations and outperforms the classical SVM approach whilst remaining computationally efficient.

Blind deconvolution involves the estimation of a sharp signal or image given only a blurry observation. Because this problem is fundamentally ill-posed, strong priors on both the sharp image and blur kernel are required to regularize the solution space. While this naturally leads to a standard MAP estimation framework, performance is compromised by unknown trade-off parameter settings, optimization heuristics, and convergence issues stemming from non-convexity and/or poor prior selections. To mitigate some of these problems, a number of authors have recently proposed substituting a variational Bayesian (VB) strategy that marginalizes over the high-dimensional image space leading to better estimates of the blur kernel. However, the underlying cost function now involves both integrals with no closed-form solution and complex, function-valued arguments, thus losing the transparency of MAP. Beyond standard Bayesian-inspired intuitions, it thus remains unclear by exactly what mechanism these methods are able to operate, rendering understanding, improvements and extensions more difficult. To elucidate these issues, we demonstrate that the VB methodology can be recast as an unconventional MAP problem with a very particular penalty/prior that couples the image, blur kernel, and noise level in a principled way. This unique penalty has a number of useful characteristics pertaining to relative concavity, local minima avoidance, and scale-invariance that allow us to rigorously explain the success of VB including its existing implementational heuristics and approximations. It also provides strict criteria for choosing the optimal image prior that, perhaps counter-intuitively, need not reflect the statistics of natural scenes. In so doing we challenge the prevailing notion of why VB is successful for blind deconvolution while providing a transparent platform for introducing enhancements.

The parameters of temporal models, such as dynamic Bayesian networks, may be modelled in a Bayesian context as static or atemporal variables that influence transition probabilities at every time step. Particle filters fail for models that include such variables, while methods that use Gibbs sampling of parameter variables may incur a per-sample cost that grows linearly with the length of the observation sequence. Storvik devised a method for incremental computation of exact sufficient statistics that, for some cases, reduces the per-sample cost to a constant. In this paper, we demonstrate a connection between Storvik's filter and a Kalman filter in parameter space and establish more general conditions under which Storvik's filter works. Drawing on an analogy to the extended Kalman filter, we develop and analyze, both theoretically and experimentally, a Taylor approximation to the parameter posterior that allows Storvik's method to be applied to a broader class of models. Our experiments on both synthetic examples and real applications show improvement over existing methods.

Probabilistic k-nearest neighbour (PKNN) classification has been introduced to improve the performance of original k-nearest neighbour (KNN) classification algorithm by explicitly modelling uncertainty in the classification of each feature vector. However, an issue common to both KNN and PKNN is to select the optimal number of neighbours, $k$. The contribution of this paper is to incorporate the uncertainty in $k$ into the decision making, and in so doing use Bayesian model averaging to provide improved classification. Indeed the problem of assessing the uncertainty in $k$ can be viewed as one of statistical model selection which is one of the most important technical issues in the statistics and machine learning domain. In this paper, a new functional approximation algorithm is proposed to reconstruct the density of the model (order) without relying on time consuming Monte Carlo simulations. In addition, this algorithm avoids cross validation by adopting Bayesian framework. The performance of this algorithm yielded very good performance on several real experimental datasets.

March 22, 2018 Abstract We propose a new algorithm to do posterior sampling of Kingman's coalescent, based upon the Particle Markov Chain Monte Carlo methodology. Specifically, the algorithm is an instantiation of the Particle Gibbs Sampling method, which alternately samples coalescent times conditioned on coalescent tree structures, and tree structures conditioned on coalescent times via the conditional Sequential Monte Carlo procedure. We implement our algorithm as a C package, and demonstrate its utility via a parameter estimation task in population genetics on both single-and multiple-locus data. The experiment results show that the proposed algorithm performs comparable to or better than several well-developed methods. 1 Introduction Data shows hierarchical structure in many domains. For example, computer vision problems often involve hierarchical representation of images [Lee et al., 2009]. In text mining, documents can be modeled as hierarchical generative processes [Blei et al., 2003, Teh et al., 2006]. Algorithms that can effectively deal with hierarchical structure play an important role in uncovering the intrinsic structures of data.

We introduce 'mixed LICORS', an algorithm for learning nonlinear, high-dimensional dynamics from spatio-temporal data, suitable for both prediction and simulation. Mixed LICORS extends the recent LICORS algorithm (Goerg and Shalizi, 2012) from hard clustering of predictive distributions to a non-parametric, EM-like soft clustering. This retains the asymptotic predictive optimality of LICORS, but, as we show in simulations, greatly improves out-of-sample forecasts with limited data. The new method is implemented in the publicly-available R package "LICORS" (http://cran.r-project.org/web/packages/LICORS/).

A popular approach for large scale data annotation tasks is crowdsourcing, wherein each data point is labeled by multiple noisy annotators. We consider the problem of inferring ground truth from noisy ordinal labels obtained from multiple annotators of varying and unknown expertise levels. Annotation models for ordinal data have been proposed mostly as extensions of their binary/categorical counterparts and have received little attention in the crowdsourcing literature. We propose a new model for crowdsourced ordinal data that accounts for instance difficulty as well as annotator expertise, and derive a variational Bayesian inference algorithm for parameter estimation. We analyze the ordinal extensions of several state-of-the-art annotator models for binary/categorical labels and evaluate the performance of all the models on two real world datasets containing ordinal query-URL relevance scores, collected through Amazon's Mechanical Turk. Our results indicate that the proposed model performs better or as well as existing state-of-the-art methods and is more resistant to'spammy' annotators (i.e., annotators who assign labels randomly without actually looking at the instance) than popular baselines such as mean, median, and majority vote which do not account for annotator expertise. Part of the work was done while at Yandex Labs.

Unsupervised feature learning has shown impressive results for a wide range of input modalities, in particular for object classification tasks in computer vision. Using a large amount of unlabeled data, unsupervised feature learning methods are utilized to construct high-level representations that are discriminative enough for subsequently trained supervised classification algorithms. However, it has never been \emph{quantitatively} investigated yet how well unsupervised learning methods can find \emph{low-level representations} for image patches without any additional supervision. In this paper we examine the performance of pure unsupervised methods on a low-level correspondence task, a problem that is central to many Computer Vision applications. We find that a special type of Restricted Boltzmann Machines (RBMs) performs comparably to hand-crafted descriptors. Additionally, a simple binarization scheme produces compact representations that perform better than several state-of-the-art descriptors.

Probabilistic logic programs are logic programs in which some of the facts are annotated with probabilities. This paper investigates how classical inference and learning tasks known from the graphical model community can be tackled for probabilistic logic programs. Several such tasks such as computing the marginals given evidence and learning from (partial) interpretations have not really been addressed for probabilistic logic programs before. The first contribution of this paper is a suite of efficient algorithms for various inference tasks. It is based on a conversion of the program and the queries and evidence to a weighted Boolean formula. This allows us to reduce the inference tasks to well-studied tasks such as weighted model counting, which can be solved using state-of-the-art methods known from the graphical model and knowledge compilation literature. The second contribution is an algorithm for parameter estimation in the learning from interpretations setting. The algorithm employs Expectation Maximization, and is built on top of the developed inference algorithms. The proposed approach is experimentally evaluated. The results show that the inference algorithms improve upon the state-of-the-art in probabilistic logic programming and that it is indeed possible to learn the parameters of a probabilistic logic program from interpretations.