Unsupervised clustering of curves according to their shapes is an important problem with broad scientific applications. The existing model-based clustering techniques either rely on simple probability models (e.g., Gaussian) that are not generally valid for shape analysis or assume the number of clusters. We develop an efficient Bayesian method to cluster curve data using an elastic shape metric that is based on joint registration and comparison of shapes of curves. The elastic-inner product matrix obtained from the data is modeled using a Wishart distribution whose parameters are assigned carefully chosen prior distributions to allow for automatic inference on the number of clusters. Posterior is sampled through an efficient Markov chain Monte Carlo procedure based on the Chinese restaurant process to infer (1) the posterior distribution on the number of clusters, and (2) clustering configuration of shapes. This method is demonstrated on a variety of synthetic data and real data examples on protein structure analysis, cell shape analysis in microscopy images, and clustering of shaped from MPEG7 database.

The Libra Toolkit is a collection of algorithms for learning and inference with discrete probabilistic models, including Bayesian networks, Markov networks, dependency networks, and sum-product networks. Compared to other toolkits, Libra places a greater emphasis on learning the structure of tractable models in which exact inference is efficient. It also includes a variety of algorithms for learning graphical models in which inference is potentially intractable, and for performing exact and approximate inference. Libra is released under a 2-clause BSD license to encourage broad use in academia and industry.

Feature Learning aims to extract relevant information contained in data sets in an automated fashion. It is driving force behind the current deep learning trend, a set of methods that have had widespread empirical success. What is lacking is a theoretical understanding of different feature learning schemes. This work provides a theoretical framework for feature learning and then characterizes when features can be learnt in an unsupervised fashion. We also provide means to judge the quality of features via rate-distortion theory and its generalizations.

We consider reinforcement learning in parameterized Markov Decision Processes (MDPs), where the parameterization may induce correlation across transition probabilities or rewards. Consequently, observing a particular state transition might yield useful information about other, unobserved, parts of the MDP. We present a version of Thompson sampling for parameterized reinforcement learning problems, and derive a frequentist regret bound for priors over general parameter spaces. The result shows that the number of instants where suboptimal actions are chosen scales logarithmically with time, with high probability. It holds for prior distributions that put significant probability near the true model, without any additional, specific closed-form structure such as conjugate or product-form priors. The constant factor in the logarithmic scaling encodes the information complexity of learning the MDP in terms of the Kullback-Leibler geometry of the parameter space.

Traditional Relational Topic Models provide a way to discover the hidden topics from a document network. Many theoretical and practical tasks, such as dimensional reduction, document clustering, link prediction, benefit from this revealed knowledge. However, existing relational topic models are based on an assumption that the number of hidden topics is known in advance, and this is impractical in many real-world applications. Therefore, in order to relax this assumption, we propose a nonparametric relational topic model in this paper. Instead of using fixed-dimensional probability distributions in its generative model, we use stochastic processes. Specifically, a gamma process is assigned to each document, which represents the topic interest of this document. Although this method provides an elegant solution, it brings additional challenges when mathematically modeling the inherent network structure of typical document network, i.e., two spatially closer documents tend to have more similar topics. Furthermore, we require that the topics are shared by all the documents. In order to resolve these challenges, we use a subsampling strategy to assign each document a different gamma process from the global gamma process, and the subsampling probabilities of documents are assigned with a Markov Random Field constraint that inherits the document network structure. Through the designed posterior inference algorithm, we can discover the hidden topics and its number simultaneously. Experimental results on both synthetic and real-world network datasets demonstrate the capabilities of learning the hidden topics and, more importantly, the number of topics.

Approximate Bayesian Computation (ABC) are likelihood-free Monte Carlo methods. ABC methods use a comparison between simulated data, using different parameters drew from a prior distribution, and observed data. This comparison process is based on computing a distance between the summary statistics from the simulated data and the observed data. For complex models, it is usually difficult to define a methodology for choosing or constructing the summary statistics. Recently, a nonparametric ABC has been proposed, that uses a dissimilarity measure between discrete distributions based on empirical kernel embeddings as an alternative for summary statistics. The nonparametric ABC outperforms other methods including ABC, kernel ABC or synthetic likelihood ABC. However, it assumes that the probability distributions are discrete, and it is not robust when dealing with few observations. In this paper, we propose to apply kernel embeddings using an smoother density estimator or Parzen estimator for comparing the empirical data distributions, and computing the ABC posterior. Synthetic data and real data were used to test the Bayesian inference of our method. We compare our method with respect to state-of-the-art methods, and demonstrate that our method is a robust estimator of the posterior distribution in terms of the number of observations.

Incorporating the side information of text corpus, i.e., authors, time stamps, and emotional tags, into the traditional text mining models has gained significant interests in the area of information retrieval, statistical natural language processing, and machine learning. One branch of these works is the so-called Author Topic Model (ATM), which incorporates the authors's interests as side information into the classical topic model. However, the existing ATM needs to predefine the number of topics, which is difficult and inappropriate in many real-world settings. In this paper, we propose an Infinite Author Topic (IAT) model to resolve this issue. Instead of assigning a discrete probability on fixed number of topics, we use a stochastic process to determine the number of topics from the data itself. To be specific, we extend a gamma-negative binomial process to three levels in order to capture the author-document-keyword hierarchical structure. Furthermore, each document is assigned a mixed gamma process that accounts for the multi-author's contribution towards this document. An efficient Gibbs sampling inference algorithm with each conditional distribution being closed-form is developed for the IAT model. Experiments on several real-world datasets show the capabilities of our IAT model to learn the hidden topics, authors' interests on these topics and the number of topics simultaneously.

The application of compressive sensing (CS) to structural health monitoring is an emerging research topic. The basic idea in CS is to use a specially-designed wireless sensor to sample signals that are sparse in some basis (e.g. wavelet basis) directly in a compressed form, and then to reconstruct (decompress) these signals accurately using some inversion algorithm after transmission to a central processing unit. However, most signals in structural health monitoring are only approximately sparse, i.e. only a relatively small number of the signal coefficients in some basis are significant, but the other coefficients are usually not exactly zero. In this case, perfect reconstruction from compressed measurements is not expected. A new Bayesian CS algorithm is proposed in which robust treatment of the uncertain parameters is explored, including integration over the prediction-error precision parameter to remove it as a "nuisance" parameter. The performance of the new CS algorithm is investigated using compressed data from accelerometers installed on a space-frame structure and on a cable-stayed bridge. Compared with other state-of-the-art CS methods including our previously-published Bayesian method which uses MAP (maximum a posteriori) estimation of the prediction-error precision parameter, the new algorithm shows superior performance in reconstruction robustness and posterior uncertainty quantification. Furthermore, our method can be utilized for recovery of lost data during wireless transmission, regardless of the level of sparseness in the signal.

We aim to reduce the burden of programming and deploying autonomous systems to work in concert with people in time-critical domains such as military field operations and disaster response. Deployment plans for these operations are frequently negotiated on-the-fly by teams of human planners. A human operator then translates the agreed-upon plan into machine instructions for the robots. We present an algorithm that reduces this translation burden by inferring the final plan from a processed form of the human team's planning conversation. Our hybrid approach combines probabilistic generative modeling with logical plan validation used to compute a highly structured prior over possible plans, enabling us to overcome the challenge of performing inference over a large solution space with only a small amount of noisy data from the team planning session. We validate the algorithm through human subject experimentations and show that it is able to infer a human team's final plan with 86% accuracy on average. We also describe a robot demonstration in which two people plan and execute a first-response collaborative task with a PR2 robot. To the best of our knowledge, this is the first work to integrate a logical planning technique within a generative model to perform plan inference.

Prior design is one of the most important problems in both statistics and machine learning. The cross validation (CV) and the widely applicable information criterion (WAIC) are predictive measures of the Bayesian estimation, however, it has been difficult to apply them to find the optimal prior because their mathematical properties in prior evaluation have been unknown and the region of the hyperparameters is too wide to be examined. In this paper, we derive a new formula by which the theoretical relation among CV, WAIC, and the generalization loss is clarified and the optimal hyperparameter can be directly found. By the formula, three facts are clarified about predictive prior design. Firstly, CV and WAIC have the same second order asymptotic expansion, hence they are asymptotically equivalent to each other as the optimizer of the hyperparameter. Secondly, the hyperparameter which minimizes CV or WAIC makes the average generalization loss to be minimized asymptotically but does not the random generalization loss. And lastly, by using the mathematical relation between priors, the variances of the optimized hyperparameters by CV and WAIC are made smaller with small computational costs. Also we show that the optimized hyperparameter by DIC or the marginal likelihood does not minimize the average or random generalization loss in general.