The focus in this paper is Bayesian system identification based on noisy incomplete modal data where we can impose spatially-sparse stiffness changes when updating a structural model. To this end, based on a similar hierarchical sparse Bayesian learning model from our previous work, we propose two Gibbs sampling algorithms. The algorithms differ in their strategies to deal with the posterior uncertainty of the equation-error precision parameter, but both sample from the conditional posterior probability density functions (PDFs) for the structural stiffness parameters and system modal parameters. The effective dimension for the Gibbs sampling is low because iterative sampling is done from only three conditional posterior PDFs that correspond to three parameter groups, along with sampling of the equation-error precision parameter from another conditional posterior PDF in one of the algorithms where it is not integrated out as a "nuisance" parameter. A nice feature from a computational perspective is that it is not necessary to solve a nonlinear eigenvalue problem of a structural model. The effectiveness and robustness of the proposed algorithms are illustrated by applying them to the IASE-ASCE Phase II simulated and experimental benchmark studies. The goal is to use incomplete modal data identified before and after possible damage to detect and assess spatially-sparse stiffness reductions induced by any damage. Our past and current focus on meeting challenges arising from Bayesian inference of structural stiffness serve to strengthen the capability of vibration-based structural system identification but our methods also have much broader applicability for inverse problems in science and technology where system matrices are to be inferred from noisy partial information about their eigenquantities.

We propose a modified expectation-maximization algorithm by introducing the concept of quantum annealing, which we call the deterministic quantum annealing expectation-maximization (DQAEM) algorithm. The expectation-maximization (EM) algorithm is an established algorithm to compute maximum likelihood estimates and applied to many practical applications. However, it is known that EM heavily depends on initial values and its estimates are sometimes trapped by local optima. To solve such a problem, quantum annealing (QA) was proposed as a novel optimization approach motivated by quantum mechanics. By employing QA, we then formulate DQAEM and present a theorem that supports its stability. Finally, we demonstrate numerical simulations to confirm its efficiency.

Stochastic fluctuations of molecule numbers are ubiquitous in biological systems. Important examples include gene expression and enzymatic processes in living cells. Such systems are typically modelled as chemical reaction networks whose dynamics are governed by the Chemical Master Equation. Despite its simple structure, no analytic solutions to the Chemical Master Equation are known for most systems. Moreover, stochastic simulations are computationally expensive, making systematic analysis and statistical inference a challenging task. Consequently, significant effort has been spent in recent decades on the development of efficient approximation and inference methods. This article gives an introduction to basic modelling concepts as well as an overview of state of the art methods. First, we motivate and introduce deterministic and stochastic methods for modelling chemical networks, and give an overview of simulation and exact solution methods. Next, we discuss several approximation methods, including the chemical Langevin equation, the system size expansion, moment closure approximations, time-scale separation approximations and hybrid methods. We discuss their various properties and review recent advances and remaining challenges for these methods. We present a comparison of several of these methods by means of a numerical case study and highlight some of their respective advantages and disadvantages. Finally, we discuss the problem of inference from experimental data in the Bayesian framework and review recent methods developed the literature. In summary, this review gives a self-contained introduction to modelling, approximations and inference methods for stochastic chemical kinetics.

With the development of free, open-source machine learning and artificial intelligence tools like Google's TensorFlow and sci-kit learn, as well as "ML-as-a-service" products like Google's Cloud Prediction API and Microsoft's Azure Machine Learning platform, it's never been easier for companies of all sizes to harness the power of data. But machine learning is such a vast, complex field. Where do you start learning how to use it in your business? In this article, we'll survey the current landscape of machine learning algorithms and explain how they work, provide example applications, share how other companies use them, and provide further resources on learning about them. This executive overview will provide the first step in learning how to apply machine learning algorithm(s) to make your business more efficient, more effective, and more profitable.

Crowdsourcing systems are popular for solving large-scale labelling tasks with low-paid workers. We study the problem of recovering the true labels from the possibly erroneous crowdsourced labels under the popular Dawid-Skene model. To address this inference problem, several algorithms have recently been proposed, but the best known guarantee is still significantly larger than the fundamental limit. We close this gap by introducing a tighter lower bound on the fundamental limit and proving that Belief Propagation (BP) exactly matches this lower bound. The guaranteed optimality of BP is the strongest in the sense that it is information-theoretically impossible for any other algorithm to correctly label a larger fraction of the tasks. Experimental results suggest that BP is close to optimal for all regimes considered and improves upon competing state-of-the-art algorithms.

Grasping is a complex process involving knowledge of the object, the surroundings, and of oneself. While humans are able to integrate and process all of the sensory information required for performing this task, equipping machines with this capability is an extremely challenging endeavor. In this paper, we investigate how deep learning techniques can allow us to translate high-level concepts such as motor imagery to the problem of robotic grasp synthesis. We explore a paradigm based on generative models for learning integrated object-action representations, and demonstrate its capacity for capturing and generating multimodal, multi-finger grasp configurations on a simulated grasping dataset.

How do you know what machine learning algorithm to choose for your classification problem? Of course, if you really care about accuracy, your best bet is to test out a couple different ones (making sure to try different parameters within each algorithm as well), and select the best one by cross-validation. But if you're simply looking for a "good enough" algorithm for your problem, or a place to start, here are some general guidelines I've found to work well over the years. If your training set is small, high bias/low variance classifiers (e.g., Naive Bayes) have an advantage over low bias/high variance classifiers (e.g., kNN), since the latter will overfit. But low bias/high variance classifiers start to win out as your training set grows (they have lower asymptotic error), since high bias classifiers aren't powerful enough to provide accurate models.

Recent years have seen an increasing popularity of learning the sparse \emph{changes} in Markov Networks. Changes in the structure of Markov Networks reflect alternations of interactions between random variables under different regimes and provide insights into the underlying system. While each individual network structure can be complicated and difficult to learn, the overall change from one network to another can be simple. This intuition gave birth to an approach that \emph{directly} learns the sparse changes without modelling and learning the individual (possibly dense) networks. In this paper, we review such a direct learning method with some latest developments along this line of research.

In this paper, we address the fundamental problem of line spectral estimation in a Bayesian framework. We target model order and parameter estimation via variational inference in a probabilistic model in which the frequencies are continuous-valued, i.e., not restricted to a grid; and the coefficients are governed by a Bernoulli-Gaussian prior model turning model order selection into binary sequence detection. Unlike earlier works which retain only point estimates of the frequencies, we undertake a more complete Bayesian treatment by estimating the posterior probability density functions (pdfs) of the frequencies and computing expectations over them. Thus, we additionally capture and operate with the uncertainty of the frequency estimates. Aiming to maximize the model evidence, variational optimization provides analytic approximations of the posterior pdfs and also gives estimates of the additional parameters. We propose an accurate representation of the pdfs of the frequencies by mixtures of von Mises pdfs, which yields closed-form expectations. We define the algorithm VALSE in which the estimates of the pdfs and parameters are iteratively updated. VALSE is a gridless, convergent method, does not require parameter tuning, can easily include prior knowledge about the frequencies and provides approximate posterior pdfs based on which the uncertainty in line spectral estimation can be quantified. Simulation results show that accounting for the uncertainty of frequency estimates, rather than computing just point estimates, significantly improves the performance. The performance of VALSE is superior to that of state-of-the-art methods and closely approaches the Cram\'er-Rao bound computed for the true model order.

Despite enormous progress in object detection and classification, the problem of incorporating expected contextual relationships among object instances into modern recognition systems remains a key challenge. In this work we propose Information Pursuit, a Bayesian framework for scene parsing that combines prior models for the geometry of the scene and the spatial arrangement of objects instances with a data model for the output of high-level image classifiers trained to answer specific questions about the scene. In the proposed framework, the scene interpretation is progressively refined as evidence accumulates from the answers to a sequence of questions. At each step, we choose the question to maximize the mutual information between the new answer and the full interpretation given the current evidence obtained from previous inquiries. We also propose a method for learning the parameters of the model from synthesized, annotated scenes obtained by top-down sampling from an easy-to-learn generative scene model. Finally, we introduce a database of annotated indoor scenes of dining room tables, which we use to evaluate the proposed approach.