Bayesian Learning
Learning Methods for Dynamic Topic Modeling in Automated Behaviour Analysis
Isupova, Olga, Kuzin, Danil, Mihaylova, Lyudmila
Semi-supervised and unsupervised systems provide operators with invaluable support and can tremendously reduce the operators load. In the light of the necessity to process large volumes of video data and provide autonomous decisions, this work proposes new learning algorithms for activity analysis in video. The activities and behaviours are described by a dynamic topic model. Two novel learning algorithms based on the expectation maximisation approach and variational Bayes inference are proposed. Theoretical derivations of the posterior of model parameters are given. The designed learning algorithms are compared with the Gibbs sampling inference scheme introduced earlier in the literature. A detailed comparison of the learning algorithms is presented on real video data. We also propose an anomaly localisation procedure, elegantly embedded in the topic modeling framework. The proposed framework can be applied to a number of areas, including transportation systems, security and surveillance.
Variational Gaussian Approximation for Poisson Data
Arridge, Simon, Ito, Kazufumi, Jin, Bangti, Zhang, Chen
The Poisson model is frequently employed to describe count data, but in a Bayesian context it leads to an analytically intractable posterior probability distribution. In this work, we analyze a variational Gaussian approximation to the posterior distribution arising from the Poisson model with a Gaussian prior. This is achieved by seeking an optimal Gaussian distribution minimizing the Kullback-Leibler divergence from the posterior distribution to the approximation, or equivalently maximizing the lower bound for the model evidence. We derive an explicit expression for the lower bound, and show the existence and uniqueness of the optimal Gaussian approximation. The lower bound functional can be viewed as a variant of classical Tikhonov regularization that penalizes also the covariance. Then we develop an efficient alternating direction maximization algorithm for solving the optimization problem, and analyze its convergence. We discuss strategies for reducing the computational complexity via low rank structure of the forward operator and the sparsity of the covariance. Further, as an application of the lower bound, we discuss hierarchical Bayesian modeling for selecting the hyperparameter in the prior distribution, and propose a monotonically convergent algorithm for determining the hyperparameter. We present extensive numerical experiments to illustrate the Gaussian approximation and the algorithms.
Bayesian nonparametric Principal Component Analysis
Elvira, Clément, Chainais, Pierre, Dobigeon, Nicolas
Principal component analysis (PCA) is very popular to perform dimension reduction. The selection of the number of significant components is essential but often based on some practical heuristics depending on the application. Only few works have proposed a probabilistic approach able to infer the number of significant components. To this purpose, this paper introduces a Bayesian nonparametric principal component analysis (BNP-PCA). The proposed model projects observations onto a random orthogonal basis which is assigned a prior distribution defined on the Stiefel manifold. The prior on factor scores involves an Indian buffet process to model the uncertainty related to the number of components. The parameters of interest as well as the nuisance parameters are finally inferred within a fully Bayesian framework via Monte Carlo sampling. A study of the (in-)consistence of the marginal maximum a posteriori estimator of the latent dimension is carried out. A new estimator of the subspace dimension is proposed. Moreover, for sake of statistical significance, a Kolmogorov-Smirnov test based on the posterior distribution of the principal components is used to refine this estimate. The behaviour of the algorithm is first studied on various synthetic examples. Finally, the proposed BNP dimension reduction approach is shown to be easily yet efficiently coupled with clustering or latent factor models within a unique framework.
Top Data Mining Algorithms Identified by IEEE & Related Python Resources
IEEE International Conference on Data Mining identified 10 algorithms in 2006 using surveys from past winners and voting. This is a list of those algorithms a short description and related python resources. The detailed paper is given here. C4.5 is an algorithm used to generate a decision tree developed by Ross Quinlan. The decision trees generated by C4.5 can be used for classification, and for this reason, C4.5 is often referred to as a statistical classifier.
Statistical inference on random dot product graphs: a survey
Athreya, Avanti, Fishkind, Donniell E., Levin, Keith, Lyzinski, Vince, Park, Youngser, Qin, Yichen, Sussman, Daniel L., Tang, Minh, Vogelstein, Joshua T., Priebe, Carey E.
The random dot product graph (RDPG) is an independent-edge random graph that is analytically tractable and, simultaneously, either encompasses or can successfully approximate a wide range of random graphs, from relatively simple stochastic block models to complex latent position graphs. In this survey paper, we describe a comprehensive paradigm for statistical inference on random dot product graphs, a paradigm centered on spectral embeddings of adjacency and Laplacian matrices. We examine the analogues, in graph inference, of several canonical tenets of classical Euclidean inference: in particular, we summarize a body of existing results on the consistency and asymptotic normality of the adjacency and Laplacian spectral embeddings, and the role these spectral embeddings can play in the construction of single- and multi-sample hypothesis tests for graph data. We investigate several real-world applications, including community detection and classification in large social networks and the determination of functional and biologically relevant network properties from an exploratory data analysis of the Drosophila connectome. We outline requisite background and current open problems in spectral graph inference.
The Truth About Bayesian Priors and Overfitting
Have you ever thought about how strong a prior is compared to observed data? In order to alleviate this trouble I will take you through some simulation exercises. These are meant as a fruit for thought and not necessarily a recommendation. However, many of the considerations we will run through will be directly applicable to your everyday life of applying Bayesian methods to your specific domain. We will start out by creating some data generated from a known process.
Mixtures and products in two graphical models
We compare two statistical models of three binary random variables. One is a mixture model and the other is a product of mixtures model called a restricted Boltzmann machine. Although the two models we study look different from their parametrizations, we show that they represent the same set of distributions on the interior of the probability simplex, and are equal up to closure. We give a semi-algebraic description of the model in terms of six binomial inequalities and obtain closed form expressions for the maximum likelihood estimates. We briefly discuss extensions to larger models.
Dependence Modeling in Ultra High Dimensions with Vine Copulas and the Graphical Lasso
Müller, Dominik, Czado, Claudia
To model high dimensional data, Gaussian methods are widely used since they remain tractable and yield parsimonious models by imposing strong assumptions on the data. Vine copulas are more flexible by combining arbitrary marginal distributions and (conditional) bivariate copulas. Yet, this adaptability is accompanied by sharply increasing computational effort as the dimension increases. The approach proposed in this paper overcomes this burden and makes the first step into ultra high dimensional non-Gaussian dependence modeling by using a divide-and-conquer approach. First, we apply Gaussian methods to split datasets into feasibly small subsets and second, apply parsimonious and flexible vine copulas thereon. Finally, we reconcile them into one joint model. We provide numerical results demonstrating the feasibility of our approach in moderate dimensions and showcase its ability to estimate ultra high dimensional non-Gaussian dependence models in thousands of dimensions.