Bayesian Learning
Systematic Evaluation of Privacy Risks of Machine Learning Models
Machine learning models are prone to memorizing sensitive data, making them vulnerable to membership inference attacks in which an adversary aims to guess if an input sample was used to train the model. In this paper, we show that prior work on membership inference attacks may severely underestimate the privacy risks by relying solely on training custom neural network classifiers to perform attacks and focusing only on the aggregate results over data samples, such as the attack accuracy. To overcome these limitations, we first propose to benchmark membership inference privacy risks by improving existing non-neural network based inference attacks and proposing a new inference attack method based on a modification of prediction entropy. We also propose benchmarks for defense mechanisms by accounting for adaptive adversaries with knowledge of the defense and also accounting for the trade-off between model accuracy and privacy risks. Using our benchmark attacks, we demonstrate that existing defense approaches are not as effective as previously reported. Next, we introduce a new approach for fine-grained privacy analysis by formulating and deriving a new metric called the privacy risk score. Our privacy risk score metric measures an individual sample's likelihood of being a training member, which allows an adversary to perform membership inference attacks with high confidence. We experimentally validate the effectiveness of the privacy risk score metric and demonstrate that the distribution of the privacy risk score across individual samples is heterogeneous. Finally, we perform an in-depth investigation for understanding why certain samples have high privacy risk scores, including correlations with model sensitivity, generalization error, and feature embeddings. Our work emphasizes the importance of a systematic and rigorous evaluation of privacy risks of machine learning models.
Deep Bayesian Gaussian Processes for Uncertainty Estimation in Electronic Health Records
Li, Yikuan, Rao, Shishir, Hassaine, Abdelaali, Ramakrishnan, Rema, Zhu, Yajie, Canoy, Dexter, Salimi-Khorshidi, Gholamreza, Lukasiewicz, Thomas, Rahimi, Kazem
One major impediment to the wider use of deep learning for clinical decision making is the difficulty of assigning a level of confidence to model predictions. Currently, deep Bayesian neural networks and sparse Gaussian processes are the main two scalable uncertainty estimation methods. However, deep Bayesian neural network suffers from lack of expressiveness, and more expressive models such as deep kernel learning, which is an extension of sparse Gaussian process, captures only the uncertainty from the higher level latent space. Therefore, the deep learning model under it lacks interpretability and ignores uncertainty from the raw data. In this paper, we merge features of the deep Bayesian learning framework with deep kernel learning to leverage the strengths of both methods for more comprehensive uncertainty estimation. Through a series of experiments on predicting the first incidence of heart failure, diabetes and depression applied to large-scale electronic medical records, we demonstrate that our method is better at capturing uncertainty than both Gaussian processes and deep Bayesian neural networks in terms of indicating data insufficiency and distinguishing true positive and false positive predictions, with a comparable generalisation performance. Furthermore, by assessing the accuracy and area under the receiver operating characteristic curve over the predictive probability, we show that our method is less susceptible to making overconfident predictions, especially for the minority class in imbalanced datasets. Finally, we demonstrate how uncertainty information derived by the model can inform risk factor analysis towards model interpretability.
Julia Language in Machine Learning: Algorithms, Applications, and Open Issues
Gao, Kaifeng, Tu, Jingzhi, Huo, Zenan, Mei, Gang, Piccialli, Francesco, Cuomo, Salvatore
Machine learning is driving development across many fields in science and engineering. A simple and efficient programming language could accelerate applications of machine learning in various fields. Currently, the programming languages most commonly used to develop machine learning algorithms include Python, MATLAB, and C/C ++. However, none of these languages well balance both efficiency and simplicity. The Julia language is a fast, easy-to-use, and open-source programming language that was originally designed for high-performance computing, which can well balance the efficiency and simplicity. This paper summarizes the related research work and developments in the application of the Julia language in machine learning. It first surveys the popular machine learning algorithms that are developed in the Julia language. Then, it investigates applications of the machine learning algorithms implemented with the Julia language. Finally, it discusses the open issues and the potential future directions that arise in the use of the Julia language in machine learning.
Anticipatory Psychological Models for Quickest Change Detection: Human Sensor Interaction
We consider anticipatory psychological models for human decision makers and their effect on sequential decision making. From a decision theoretic point of view, such models are time inconsistent meaning that Bellman's principle of optimality does not hold. The aim of this paper is to study how such an anxiety-based anticipatory utility can affect sequential decision making, such as quickest change detection, in multi-agent systems. We show that the interaction between anticipation-driven agents and sequential decision maker results in unusual (nonconvex) structure of the optimal decision policy. The methodology yields a useful mathematical framework for sensor interaction involving a human decision maker (with behavioral economics constraints) and a sensor equipped with automated sequential detector.
Understanding the robustness of deep neural network classifiers for breast cancer screening
Oleszkiewicz, Witold, Makino, Taro, Jastrzębski, Stanisław, Trzciński, Tomasz, Moy, Linda, Cho, Kyunghyun, Heacock, Laura, Geras, Krzysztof J.
Deep neural networks (DNNs) show promise in breast cancer screening, but their robustness to input perturbations must be better understood before they can be clinically implemented. There exists extensive literature on this subject in the context of natural images that can potentially be built upon. However, it cannot be assumed that conclusions about robustness will transfer from natural images to mammogram images, due to significant differences between the two image modalities. In order to determine whether conclusions will transfer, we measure the sensitivity of a radiologist-level screening mammogram image classifier to four commonly studied input perturbations that natural image classifiers are sensitive to. We find that mammogram image classifiers are also sensitive to these perturbations, which suggests that we can build on the existing literature. We also perform a detailed analysis on the effects of low-pass filtering, and find that it degrades the visibility of clinically meaningful features called microcalcifications. Since low-pass filtering removes semantically meaningful information that is predictive of breast cancer, we argue that it is undesirable for mammogram image classifiers to be invariant to it. This is in contrast to natural images, where we do not want DNNs to be sensitive to low-pass filtering due to its tendency to remove information that is human-incomprehensible.
Improving Calibration in Mixup-trained Deep Neural Networks through Confidence-Based Loss Functions
Maroñas, Juan, Ramos, Daniel, Paredes, Roberto
Deep Neural Networks (DNN) represent the state of the art in many tasks. However, due to their overparameterization, their generalization capabilities are in doubt and are still under study. Consequently, DNN can overfit and assign overconfident predictions, as they tend to learn highly oscillating decision thresholds. This has been shown to affect the calibration of the confidences assigned to unseen data. Data Augmentation (DA) strategies have been proposed to overcome some of these limitations. One of the most popular is Mixup, which has shown a great ability to improve the accuracy of these models. Recent work has provided evidence that Mixup also improves the uncertainty quantification and calibration of DNN. In this work, we argue and provide empirical evidence that, due to its fundamentals, Mixup does not necessarily improve calibration. Based on our observations we propose a new loss function that improves the calibration, and also sometimes the accuracy. Our loss is inspired by Bayes decision theory and introduces a new training framework for designing losses for probabilistic modelling. We provide state-of-the-art accuracy with consistent improvements in calibration performance.
Unlocking the Power of Artificial Intelligence and Big Data in Medicine
Most of the daily news and recently published scientific papers on research, innovations, and applications in artificial intelligence (AI) refer to what is known as machine learning--algorithms using massive amounts of data and various methodologies to find patterns, support decisions, make predictions, or, for the deep learning part, self-identify important features in data. However, AI is a complex concept to grasp, and most people have little understanding of what it really is. AI was founded as an academic discipline in 1956 and, despite its youth, already has a rich history [1,2]. In more than 60 years of exploration and progress, AI has become a large field of research and development involving multidisciplinary approaches to address many challenges, from theoretical frameworks, methods, and tools to real implementations, risk analysis, and impact measures. The definition of AI is a moving target and changes over time with the evolution of the field. Since its early days, the field of AI has allowed the development of many techniques supporting decision support and prediction, as it is usually made by humans. As early as 1958, a perceptron was expected to be able "to walk, talk, see, write, reproduce itself and be conscious of its existence," which led a large scientific controversy between neural network and symbolic reasoning approaches [3].
On Information Plane Analyses of Neural Network Classifiers -- A Review
We review the current literature concerned with information plane analyses of neural network classifiers. While the underlying information bottleneck theory and the claim that information-theoretic compression is causally linked to generalization are plausible, empirical evidence was found to be both supporting and conflicting. We review this evidence together with a detailed analysis how the respective information quantities were estimated. Our analysis suggests that compression visualized in information planes is not information-theoretic, but is rather compatible with geometric compression of the activations.
Probabilistic learning of boolean functions applied to the binary classification problem with categorical covariates
Consider a sample y {0, 1} n generated by two different Bernoulli distributions with parameters π 0 and π 1, and consider the set S {1,..., n} as the set of all indices i such that P (y i) π 1 . Assuming that the components of the vector y i are conditionally independent given θ (S, π 0, π 1), the likelihood function is the product of two Binomial distribution functions, and will attain a global maximum at the set S L(y) {i: 1 i n y i 1} (let's call this set the onset of the vector y), with maximum likelihood estimators given by ˆπ 0 0 and ˆπ 1 1. Now consider a design matrix X R n p and a function f: R p {0, 1} such that ψ(X i) 1 i S, where X i is the i-th row of X. Again, if the function f is not constrained in any way, the problem is the same and the same trivial solution applies, with function f defined only in the set of rows of X. In this extreme case, the solution will usually not generalize well, and also will not provide any interesting interpretation (since f is just an enumeration based on the onset of y). Standard methods for the binary classification problem are concerned with the task of estimating f constraining it in different ways such that this trivial solution (associated with the problem of overfitting) is avoided.
Sequential Bayesian Experimental Design for Implicit Models via Mutual Information
Kleinegesse, Steven, Drovandi, Christopher, Gutmann, Michael U.
Bayesian experimental design (BED) is a framework that uses statistical models and decision making under uncertainty to optimise the cost and performance of a scientific experiment. Sequential BED, as opposed to static BED, considers the scenario where we can sequentially update our beliefs about the model parameters through data gathered in the experiment. A class of models of particular interest for the natural and medical sciences are implicit models, where the data generating distribution is intractable, but sampling from it is possible. Even though there has been a lot of work on static BED for implicit models in the past few years, the notoriously difficult problem of sequential BED for implicit models has barely been touched upon. We address this gap in the literature by devising a novel sequential design framework for parameter estimation that uses the Mutual Information (MI) between model parameters and simulated data as a utility function to find optimal experimental designs, which has not been done before for implicit models. Our approach uses likelihood-free inference by ratio estimation to simultaneously estimate posterior distributions and the MI. During the sequential BED procedure we utilise Bayesian optimisation to help us optimise the MI utility. We find that our framework is efficient for the various implicit models tested, yielding accurate parameter estimates after only a few iterations.