Bayesian Learning
Posterior Model Adaptation With Updated Priors
Classification approaches based on the direct estimation and analysis of posterior probabilities will degrade if the original class priors begin to change. We prove that a unique (up to scale) solution is possible to recover the data likelihoods for a test example from its original class posteriors and dataset priors. Given the recovered likelihoods and a set of new priors, the posteriors can be re-computed using Bayes' Rule to reflect the influence of the new priors. The method is simple to compute and allows a dynamic update of the original posteriors.
Meta-Learning Stationary Stochastic Process Prediction with Convolutional Neural Processes
Foong, Andrew Y. K., Bruinsma, Wessel P., Gordon, Jonathan, Dubois, Yann, Requeima, James, Turner, Richard E.
Stationary stochastic processes (SPs) are a key component of many probabilistic models, such as those for off-the-grid spatio-temporal data. They enable the statistical symmetry of underlying physical phenomena to be leveraged, thereby aiding generalization. Prediction in such models can be viewed as a translation equivariant map from observed data sets to predictive SPs, emphasizing the intimate relationship between stationarity and equivariance. Building on this, we propose the Convolutional Neural Process (ConvNP), which endows Neural Processes (NPs) with translation equivariance and extends convolutional conditional NPs to allow for dependencies in the predictive distribution. The latter enables ConvNPs to be deployed in settings which require coherent samples, such as Thompson sampling or conditional image completion. Moreover, we propose a new maximum-likelihood objective to replace the standard ELBO objective in NPs, which conceptually simplifies the framework and empirically improves performance. We demonstrate the strong performance and generalization capabilities of ConvNPs on 1D regression, image completion, and various tasks with real-world spatio-temporal data.
Continuous-Time Bayesian Networks with Clocks
Engelmann, Nicolai, Linzner, Dominik, Koeppl, Heinz
Structured stochastic processes evolving in continuous time present a widely adopted framework to model phenomena occurring in nature and engineering. However, such models are often chosen to satisfy the Markov property to maintain tractability. One of the more popular of such memoryless models are Continuous Time Bayesian Networks (CTBNs). In this work, we lift its restriction to exponential survival times to arbitrary distributions. Current extensions achieve this via auxiliary states, which hinder tractability. To avoid that, we introduce a set of node-wise clocks to construct a collection of graph-coupled semi-Markov chains. We provide algorithms for parameter and structure inference, which make use of local dependencies and conduct experiments on synthetic data and a data-set generated through a benchmark tool for gene regulatory networks. In doing so, we point out advantages compared to current CTBN extensions.
Decentralized Stochastic Gradient Langevin Dynamics and Hamiltonian Monte Carlo
Gürbüzbalaban, Mert, Gao, Xuefeng, Hu, Yuanhan, Zhu, Lingjiong
Stochastic gradient Langevin dynamics (SGLD) and stochastic gradient Hamiltonian Monte Carlo (SGHMC) are two popular Markov Chain Monte Carlo (MCMC) algorithms for Bayesian inference that can scale to large datasets, allowing to sample from the posterior distribution of a machine learning (ML) model based on the input data and the prior distribution over the model parameters. However, these algorithms do not apply to the decentralized learning setting, when a network of agents are working collaboratively to learn the parameters of an ML model without sharing their individual data due to privacy reasons or communication constraints. We study two algorithms: Decentralized SGLD (DE-SGLD) and Decentralized SGHMC (DE-SGHMC) which are adaptations of SGLD and SGHMC methods that allow scaleable Bayesian inference in the decentralized setting. We show that when the posterior distribution is strongly log-concave, the iterates of these algorithms converge linearly to a neighborhood of the target distribution in the 2-Wasserstein metric. We illustrate the results for decentralized Bayesian linear regression and Bayesian logistic regression problems.
Mastering Probability and Statistics in Python
In today's ultra-competitive business universe, Probability and Statistics are the most important fields of study. That is because statistical research presents businesses with the data they need to make informed decisions in every business area, whether it is market research, product development, product launch timing, customer data analysis, sales forecast, or employee performance. But why do you need to master probability and statistics in Python? The course'Mastering Probability and Statistics in Python' is designed carefully to reflect the most in-demand skills that will help you in understanding the concepts and methodology with regards to Python. How is this course different? This course is designed for beginners, although we will go far deep gradually.
Second Order PAC-Bayesian Bounds for the Weighted Majority Vote
Masegosa, Andrés R., Lorenzen, Stephan S., Igel, Christian, Seldin, Yevgeny
We present a novel analysis of the expected risk of weighted majority vote in multiclass classification. The analysis takes correlation of predictions by ensemble members into account and provides a bound that is amenable to efficient minimization, which yields improved weighting for the majority vote. We also provide a specialized version of our bound for binary classification, which allows to exploit additional unlabeled data for tighter risk estimation. In experiments, we apply the bound to improve weighting of trees in random forests and show that, in contrast to the commonly used first order bound, minimization of the new bound typically does not lead to degradation of the test error of the ensemble.
Multi-resolution Super Learner for Voxel-wise Classification of Prostate Cancer Using Multi-parametric MRI
Jin, Jin, Zhang, Lin, Leng, Ethan, Metzger, Gregory J., Koopmeiners, Joseph S.
While current research has shown the importance of Multi-parametric MRI (mpMRI) in diagnosing prostate cancer (PCa), further investigation is needed for how to incorporate the specific structures of the mpMRI data, such as the regional heterogeneity and between-voxel correlation within a subject. This paper proposes a machine learning-based method for improved voxel-wise PCa classification by taking into account the unique structures of the data. We propose a multi-resolution modeling approach to account for regional heterogeneity, where base learners trained locally at multiple resolutions are combined using the super learner, and account for between-voxel correlation by efficient spatial Gaussian kernel smoothing. The method is flexible in that the super learner framework allows implementation of any classifier as the base learner, and can be easily extended to classifying cancer into more sub-categories. We describe detailed classification algorithm for the binary PCa status, as well as the ordinal clinical significance of PCa for which a weighted likelihood approach is implemented to enhance the detection of the less prevalent cancer categories. We illustrate the advantages of the proposed approach over conventional modeling and machine learning approaches through simulations and application to in vivo data.
Reasoning with Contextual Knowledge and Influence Diagrams
Influence diagrams (IDs) are well-known formalisms extending Bayesian networks to model decision situations under uncertainty. Although they are convenient as a decision theoretic tool, their knowledge representation ability is limited in capturing other crucial notions such as logical consistency. We complement IDs with the light-weight description logic (DL) EL to overcome such limitations. We consider a setup where DL axioms hold in some contexts, yet the actual context is uncertain. The framework benefits from the convenience of using DL as a domain knowledge representation language and the modelling strength of IDs to deal with decisions over contexts in the presence of contextual uncertainty. We define related reasoning problems and study their computational complexity.
Challenges in Benchmarking Stream Learning Algorithms with Real-world Data
Souza, Vinicius M. A., Reis, Denis M. dos, Maletzke, Andre G., Batista, Gustavo E. A. P. A.
Streaming data are increasingly present in real-world applications such as sensor measurements, satellite data feed, stock market, and financial data. The main characteristics of these applications are the online arrival of data observations at high speed and the susceptibility to changes in the data distributions due to the dynamic nature of real environments. The data stream mining community still faces some primary challenges and difficulties related to the comparison and evaluation of new proposals, mainly due to the lack of publicly available non-stationary real-world datasets. The comparison of stream algorithms proposed in the literature is not an easy task, as authors do not always follow the same recommendations, experimental evaluation procedures, datasets, and assumptions. In this paper, we mitigate problems related to the choice of datasets in the experimental evaluation of stream classifiers and drift detectors. To that end, we propose a new public data repository for benchmarking stream algorithms with real-world data. This repository contains the most popular datasets from literature and new datasets related to a highly relevant public health problem that involves the recognition of disease vector insects using optical sensors. The main advantage of these new datasets is the prior knowledge of their characteristics and patterns of changes to evaluate new adaptive algorithm proposals adequately. We also present an in-depth discussion about the characteristics, reasons, and issues that lead to different types of changes in data distribution, as well as a critical review of common problems concerning the current benchmark datasets available in the literature.
Directional Primitives for Uncertainty-Aware Motion Estimation in Urban Environments
Senanayake, Ransalu, Toyungyernsub, Maneekwan, Wang, Mingyu, Kochenderfer, Mykel J., Schwager, Mac
We can use driving data collected over a long period of time to extract rich information about how vehicles behave in different areas of the roads. In this paper, we introduce the concept of directional primitives, which is a representation of prior information of road networks. Specifically, we represent the uncertainty of directions using a mixture of von Mises distributions and associated speeds using gamma distributions. These location-dependent primitives can be combined with motion information of surrounding vehicles to predict their future behavior in the form of probability distributions. Experiments conducted on highways, intersections, and roundabouts in the Carla simulator, as well as real-world urban driving datasets, indicate that primitives lead to better uncertainty-aware motion estimation.