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 Bayesian Learning


On Learning-Curve Monotonicity for Maximum Likelihood Estimators

arXiv.org Machine Learning

The property of learning-curve monotonicity, highlighted in a recent series of work by Loog, Mey and Viering, describes algorithms which only improve in average performance given more data, for any underlying data distribution within a given family. We establish the first nontrivial monotonicity guarantees for the maximum likelihood estimator in a variety of well-specified parametric settings. For sequential prediction with log loss, we show monotonicity (in fact complete monotonicity) of the forward KL divergence for Gaussian vectors with unknown covariance and either known or unknown mean, as well as for Gamma variables with unknown scale parameter. The Gaussian setting was explicitly highlighted as open in the aforementioned works, even in dimension 1. Finally we observe that for reverse KL divergence, a folklore trick yields monotonicity for very general exponential families. All results in this paper were derived by variants of GPT-5.2 Pro. Humans did not provide any proof strategies or intermediate arguments, but only prompted the model to continue developing additional results, and verified and transcribed its proofs.


Topology Identification and Inference over Graphs

arXiv.org Machine Learning

Topology identification and inference of processes evolving over graphs arise in timely applications involving brain, transportation, financial, power, as well as social and information networks. This chapter provides an overview of graph topology identification and statistical inference methods for multidimensional relational data. Approaches for undirected links connecting graph nodes are outlined, going all the way from correlation metrics to covariance selection, and revealing ties with smooth signal priors. To account for directional (possibly causal) relations among nodal variables and address the limitations of linear time-invariant models in handling dynamic as well as nonlinear dependencies, a principled framework is surveyed to capture these complexities through judiciously selected kernels from a prescribed dictionary. Generalizations are also described via structural equations and vector autoregressions that can exploit attributes such as low rank, sparsity, acyclicity, and smoothness to model dynamic processes over possibly time-evolving topologies. It is argued that this approach supports both batch and online learning algorithms with convergence rate guarantees, is amenable to tensor (that is, multi-way array) formulations as well as decompositions that are well-suited for multidimensional network data, and can seamlessly leverage high-order statistical information.


Rethinking Causal Discovery Through the Lens of Exchangeability

arXiv.org Artificial Intelligence

Causal discovery methods have traditionally been developed under two distinct regimes: independent and identically distributed (i.i.d.) and timeseries data, each governed by separate modelling assumptions. In this paper, we argue that the i.i.d. setting can and should be reframed in terms of exchangeability, a strictly more general symmetry principle. We present the implications of this reframing, alongside two core arguments: (1) a conceptual argument, based on extending the dependency of experimental causal inference on exchangeability to causal discovery; and (2) an empirical argument, showing that many existing i.i.d. causal-discovery methods are predicated on exchangeability assumptions, and that the sole extensive widely-used real-world "i.i.d." benchmark (the Tübingen dataset) consists mainly of exchangeable (and not i.i.d.) examples. Building on this insight, we introduce a novel synthetic dataset that enforces only the exchangeability assumption, without imposing the stronger i.i.d. assumption. We show that our exchangeable synthetic dataset mirrors the statistical structure of the real-world "i.i.d." dataset more closely than all other i.i.d. synthetic datasets. Furthermore, we demonstrate the predictive capability of this dataset by proposing a neural-network-based causal-discovery algorithm trained exclusively on our synthetic dataset, and which performs similarly to other state-of-the-art i.i.d. methods on the real-world benchmark.


What Kind of Reasoning (if any) is an LLM actually doing? On the Stochastic Nature and Abductive Appearance of Large Language Models

arXiv.org Artificial Intelligence

This article looks at how reasoning works in current Large Language Models (LLMs) that function using the token-completion method. It examines their stochastic nature and their similarity to human abductive reasoning. The argument is that these LLMs create text based on learned patterns rather than performing actual abductive reasoning. When their output seems abductive, this is largely because they are trained on human-generated texts that include reasoning structures. Examples are used to show how LLMs can produce plausible ideas, mimic commonsense reasoning, and give explanatory answers without being grounded in truth, semantics, verification, or understanding, and without performing any real abductive reasoning. This dual nature, where the models have a stochastic base but appear abductive in use, has important consequences for how LLMs are evaluated and applied. They can assist with generating ideas and supporting human thinking, but their outputs must be critically assessed because they cannot identify truth or verify their explanations. The article concludes by addressing five objections to these points, noting some limitations in the analysis, and offering an overall evaluation.


Minimization of Functions on Dually Flat Spaces Using Geodesic Descent Based on Dual Connections

arXiv.org Machine Learning

We propose geodesic-based optimization methods on dually flat spaces, where the geometric structure of the parameter manifold is closely related to the form of the objective function. A primary application is maximum likelihood estimation in statistical models, especially exponential families, whose model manifolds are dually flat. We show that an m-geodesic update, which directly optimizes the log-likelihood, can theoretically reach the maximum likelihood estimator in a single step. In contrast, an e-geodesic update has a practical advantage in cases where the parameter space is geodesically complete, allowing optimization without explicitly handling parameter constraints. We establish the theoretical properties of the proposed methods and validate their effectiveness through numerical experiments.


Debiased Bayesian Inference for High-dimensional Regression Models

arXiv.org Machine Learning

Applied researchers now routinely work with regression models that feature a large number of covariates. A primary inferential goal in econometrics is to estimate the ceteris paribus effect of a specific variable while controlling for other variables (Belloni et al., 2013a, 2018). The prevailing practice interprets the coefficient on a regressor as a causal effect, conditional on the included controls. As the plausibility of conditional unconfoundedness is often argued using a large set of covariates, practitioners have increasingly embraced high-dimensional regression models. This setting has been extensively studied, predominantly using frequentist methods. Bayesian inference, on the other hand, has long been valued for its coherent framework for handling uncertainty in statistical analysis. As highlighted by Rubin (1984), Bayesian methods provide direct answers to many empirical questions by quantifying uncertainty about unknown parameters conditional on the observed data.


WTNN: Weibull-Tailored Neural Networks for survival analysis

arXiv.org Machine Learning

The Weibull distribution is a commonly adopted choice for modeling the survival of systems subject to maintenance over time. When only proxy indicators and censored observations are available, it becomes necessary to express the distribution's parameters as functions of time-dependent covariates. Deep neural networks provide the flexibility needed to learn complex relationships between these covariates and operational lifetime, thereby extending the capabilities of traditional regression-based models. Motivated by the analysis of a fleet of military vehicles operating in highly variable and demanding environments, as well as by the limitations observed in existing methodologies, this paper introduces WTNN, a new neural network-based modeling framework specifically designed for Weibull survival studies. The proposed architecture is specifically designed to incorporate qualitative prior knowledge regarding the most influential covariates, in a manner consistent with the shape and structure of the Weibull distribution. Through numerical experiments, we show that this approach can be reliably trained on proxy and right-censored data, and is capable of producing robust and interpretable survival predictions that can improve existing approaches.


All Emulators are Wrong, Many are Useful, and Some are More Useful Than Others: A Reproducible Comparison of Computer Model Surrogates

arXiv.org Machine Learning

Accurate and efficient surrogate modeling is essential for modern computational science, and there are a staggering number of emulation methods to choose from. With new methods being developed all the time, comparing the relative strengths and weaknesses of different methods remains a challenge due to inconsistent benchmarking practices and (sometimes) limited reproducibility and transparency. In this work, we present a large-scale, fully reproducible comparison of $29$ distinct emulators across $60$ canonical test functions and $40$ real emulation datasets. To facilitate rigorous, apples-to-apples comparisons, we introduce the R package \texttt{duqling}, which streamlines reproducible simulation studies using a consistent, simple syntax, and automatic internal scaling of inputs. This framework allows researchers to compare emulators in a unified environment and makes it possible to replicate or extend previous studies with minimal effort, even across different publications. Our results provide detailed empirical insight into the strengths and weaknesses of state-of-the-art emulators and offer guidance for both method developers and practitioners selecting a surrogate for new data. We discuss best practices for emulator comparison and highlight how \texttt{duqling} can accelerate research in emulator design and application.


Bayesian Networks, Markov Networks, Moralisation, Triangulation: a Categorical Perspective

arXiv.org Artificial Intelligence

Moralisation and Triangulation are transformations allowing to switch between different ways of factoring a probability distribution into a graphical model. Moralisation allows to view a Bayesian network (a directed model) as a Markov network (an undirected model), whereas triangulation addresses the opposite direction. We present a categorical framework where these transformations are modelled as functors between a category of Bayesian networks and one of Markov networks. The two kinds of network (the objects of these categories) are themselves represented as functors from a `syntax' domain to a `semantics' codomain. Notably, moralisation and triangulation can be defined inductively on such syntax via functor pre-composition. Moreover, while moralisation is fully syntactic, triangulation relies on semantics. This leads to a discussion of the variable elimination algorithm, reinterpreted here as a functor in its own right, that splits the triangulation procedure in two: one purely syntactic, the other purely semantic. This approach introduces a functorial perspective into the theory of probabilistic graphical models, which highlights the distinctions between syntactic and semantic modifications.


Bayesian Semiparametric Mixture Cure (Frailty) Models

arXiv.org Machine Learning

In recent years, mixture cure models have gained increasing popularity in survival analysis as an alternative to the Cox proportional hazards model, particularly in settings where a subset of patients is considered cured. The proportional hazards mixture cure model is especially advantageous when the presence of a cured fraction can be reasonably assumed, providing a more accurate representation of long-term survival dynamics. In this study, we propose a novel hierarchical Bayesian framework for the semiparametric mixture cure model, which accommodates both the inclusion and exclusion of a frailty component, allowing for greater flexibility in capturing unobserved heterogeneity among patients. Samples from the posterior distribution are obtained using a Markov chain Monte Carlo method, leveraging a hierarchical structure inspired by Bayesian Lasso. Comprehensive simulation studies are conducted across diverse scenarios to evaluate the performance and robustness of the proposed models. Bayesian model comparison and assessment are performed using various criteria. Finally, the proposed approaches are applied to two well-known datasets in the cure model literature: the E1690 melanoma trial and a colon cancer clinical trial.