Bayesian Learning
Causal Bandits on General Graphs
Maiti, Aurghya, Nair, Vineet, Sinha, Gaurav
We study the problem of determining the best intervention in a Causal Bayesian Network (CBN) specified only by its causal graph. We model this as a stochastic multi-armed bandit (MAB) problem with side-information, where the interventions correspond to the arms of the bandit instance. First, we propose a simple regret minimization algorithm that takes as input a semi-Markovian causal graph with atomic interventions and possibly unobservable variables, and achieves $\tilde{O}(\sqrt{M/T})$ expected simple regret, where $M$ is dependent on the input CBN and could be very small compared to the number of arms. We also show that this is almost optimal for CBNs described by causal graphs having an $n$-ary tree structure. Our simple regret minimization results, both upper and lower bound, subsume previous results in the literature, which assumed additional structural restrictions on the input causal graph. In particular, our results indicate that the simple regret guarantee of our proposed algorithm can only be improved by considering more nuanced structural restrictions on the causal graph. Next, we propose a cumulative regret minimization algorithm that takes as input a general causal graph with all observable nodes and atomic interventions and performs better than the optimal MAB algorithm that does not take causal side-information into account. We also experimentally compare both our algorithms with the best known algorithms in the literature. To the best of our knowledge, this work gives the first simple and cumulative regret minimization algorithms for CBNs with general causal graphs under atomic interventions and having unobserved confounders.
An Evaluation of Machine Learning and Deep Learning Models for Drought Prediction using Weather Data
Drought is a serious natural disaster that has a long duration and a wide range of influence. To decrease the drought-caused losses, drought prediction is the basis of making the corresponding drought prevention and disaster reduction measures. While this problem has been studied in the literature, it remains unknown whether drought can be precisely predicted or not with machine learning models using weather data. To answer this question, a real-world public dataset is leveraged in this study and different drought levels are predicted using the last 90 days of 18 meteorological indicators as the predictors. In a comprehensive approach, 16 machine learning models and 16 deep learning models are evaluated and compared. The results show no single model can achieve the best performance for all evaluation metrics simultaneously, which indicates the drought prediction problem is still challenging. As benchmarks for further studies, the code and results are publicly available in a Github repository.
EVARS-GPR: EVent-triggered Augmented Refitting of Gaussian Process Regression for Seasonal Data
Haselbeck, Florian, Grimm, Dominik G.
Time series forecasting is a growing domain with diverse applications. However, changes of the system behavior over time due to internal or external influences are challenging. Therefore, predictions of a previously learned fore-casting model might not be useful anymore. In this paper, we present EVent-triggered Augmented Refitting of Gaussian Process Regression for Seasonal Data (EVARS-GPR), a novel online algorithm that is able to handle sudden shifts in the target variable scale of seasonal data. For this purpose, EVARS-GPR com-bines online change point detection with a refitting of the prediction model using data augmentation for samples prior to a change point. Our experiments on sim-ulated data show that EVARS-GPR is applicable for a wide range of output scale changes. EVARS-GPR has on average a 20.8 % lower RMSE on different real-world datasets compared to methods with a similar computational resource con-sumption. Furthermore, we show that our algorithm leads to a six-fold reduction of the averaged runtime in relation to all comparison partners with a periodical refitting strategy. In summary, we present a computationally efficient online fore-casting algorithm for seasonal time series with changes of the target variable scale and demonstrate its functionality on simulated as well as real-world data. All code is publicly available on GitHub: https://github.com/grimmlab/evars-gpr.
Analyzing Relevance Vector Machines using a single penalty approach
Dixit, Anand, Roy, Vivekananda
Relevance vector machine (RVM) is a popular sparse Bayesian learning model typically used for prediction. Recently it has been shown that improper priors assumed on multiple penalty parameters in RVM may lead to an improper posterior. Currently in the literature, the sufficient conditions for posterior propriety of RVM do not allow improper priors over the multiple penalty parameters. In this article, we propose a single penalty relevance vector machine (SPRVM) model in which multiple penalty parameters are replaced by a single penalty and we consider a semi Bayesian approach for fitting the SPRVM. The necessary and sufficient conditions for posterior propriety of SPRVM are more liberal than those of RVM and allow for several improper priors over the penalty parameter. Additionally, we also prove the geometric ergodicity of the Gibbs sampler used to analyze the SPRVM model and hence can estimate the asymptotic standard errors associated with the Monte Carlo estimate of the means of the posterior predictive distribution. Such a Monte Carlo standard error cannot be computed in the case of RVM, since the rate of convergence of the Gibbs sampler used to analyze RVM is not known. The predictive performance of RVM and SPRVM is compared by analyzing three real life datasets.
Feature Cross Search via Submodular Optimization
Chen, Lin, Esfandiari, Hossein, Fu, Gang, Mirrokni, Vahab S., Yu, Qian
In this paper, we study feature cross search as a fundamental primitive in feature engineering. The importance of feature cross search especially for the linear model has been known for a while, with well-known textbook examples. In this problem, the goal is to select a small subset of features, combine them to form a new feature (called the crossed feature) by considering their Cartesian product, and find feature crosses to learn an \emph{accurate} model. In particular, we study the problem of maximizing a normalized Area Under the Curve (AUC) of the linear model trained on the crossed feature column. First, we show that it is not possible to provide an $n^{1/\log\log n}$-approximation algorithm for this problem unless the exponential time hypothesis fails. This result also rules out the possibility of solving this problem in polynomial time unless $\mathsf{P}=\mathsf{NP}$. On the positive side, by assuming the \naive\ assumption, we show that there exists a simple greedy $(1-1/e)$-approximation algorithm for this problem. This result is established by relating the AUC to the total variation of the commutator of two probability measures and showing that the total variation of the commutator is monotone and submodular. To show this, we relate the submodularity of this function to the positive semi-definiteness of a corresponding kernel matrix. Then, we use Bochner's theorem to prove the positive semi-definiteness by showing that its inverse Fourier transform is non-negative everywhere. Our techniques and structural results might be of independent interest.
The Machine Learning Tribes
In his book'The Master Algorithm', Pedro Domingos dissects the ML trains of thought into 5 tribes/groups. Symbolists believe in inductive logic, using data and rules to model intelligent systems. This can be computationally intensive at times, subjected to over-fitting and the'Bias-Variance' paradigm. However, experimentation is the key in most of the methods employed here, for e.g. Connectionists are interested in learning how the brain works and mimic the same using neural networks. Deep learning and mapping the brain (Neurosciences) is endogenous to this tribe.
Latent structure blockmodels for Bayesian spectral graph clustering
Passino, Francesco Sanna, Heard, Nicholas A.
Spectral embedding of network adjacency matrices often produces node representations living approximately around low-dimensional submanifold structures. In particular, hidden substructure is expected to arise when the graph is generated from a latent position model. Furthermore, the presence of communities within the network might generate community-specific submanifold structures in the embedding, but this is not explicitly accounted for in most statistical models for networks. In this article, a class of models called latent structure block models (LSBM) is proposed to address such scenarios, allowing for graph clustering when community-specific one dimensional manifold structure is present. LSBMs focus on a specific class of latent space model, the random dot product graph (RDPG), and assign a latent submanifold to the latent positions of each community. A Bayesian model for the embeddings arising from LSBMs is discussed, and shown to have a good performance on simulated and real world network data. The model is able to correctly recover the underlying communities living in a one-dimensional manifold, even when the parametric form of the underlying curves is unknown, achieving remarkable results on a variety of real data.
Learning Bayesian Networks through Birkhoff Polytope: A Relaxation Method
Dallakyan, Aramayis, Pourahmadi, Mohsen
We establish a novel framework for learning a directed acyclic graph (DAG) when data are generated from a Gaussian, linear structural equation model. It consists of two parts: (1) introduce a permutation matrix as a new parameter within a regularized Gaussian log-likelihood to represent variable ordering; and (2) given the ordering, estimate the DAG structure through sparse Cholesky factor of the inverse covariance matrix. For permutation matrix estimation, we propose a relaxation technique that avoids the NP-hard combinatorial problem of order estimation. Given an ordering, a sparse Cholesky factor is estimated using a cyclic coordinatewise descent algorithm which decouples row-wise. Our framework recovers DAGs without the need for an expensive verification of the acyclicity constraint or enumeration of possible parent sets. We establish numerical convergence of the algorithm, and consistency of the Cholesky factor estimator when the order of variables is known. Through several simulated and macro-economic datasets, we study the scope and performance of the proposed methodology.
A Comparison of the Delta Method and the Bootstrap in Deep Learning Classification
Nilsen, Geir K., Munthe-Kaas, Antonella Z., Skaug, Hans J., Brun, Morten
We validate the recently introduced deep learning classification adapted Delta method by a comparison with the classical Bootstrap. We show that there is a strong linear relationship between the quantified predictive epistemic uncertainty levels obtained from the two methods when applied on two LeNet-based neural network classifiers using the MNIST and CIFAR-10 datasets. Furthermore, we demonstrate that the Delta method offers a five times computation time reduction compared to the Bootstrap.
Bayesian decision-making under misspecified priors with applications to meta-learning
Simchowitz, Max, Tosh, Christopher, Krishnamurthy, Akshay, Hsu, Daniel, Lykouris, Thodoris, Dudík, Miroslav, Schapire, Robert E.
Thompson sampling and other Bayesian sequential decision-making algorithms are among the most popular approaches to tackle explore/exploit trade-offs in (contextual) bandits. The choice of prior in these algorithms offers flexibility to encode domain knowledge but can also lead to poor performance when misspecified. In this paper, we demonstrate that performance degrades gracefully with misspecification. We prove that the expected reward accrued by Thompson sampling (TS) with a misspecified prior differs by at most $\tilde{\mathcal{O}}(H^2 \epsilon)$ from TS with a well specified prior, where $\epsilon$ is the total-variation distance between priors and $H$ is the learning horizon. Our bound does not require the prior to have any parametric form. For priors with bounded support, our bound is independent of the cardinality or structure of the action space, and we show that it is tight up to universal constants in the worst case. Building on our sensitivity analysis, we establish generic PAC guarantees for algorithms in the recently studied Bayesian meta-learning setting and derive corollaries for various families of priors. Our results generalize along two axes: (1) they apply to a broader family of Bayesian decision-making algorithms, including a Monte-Carlo implementation of the knowledge gradient algorithm (KG), and (2) they apply to Bayesian POMDPs, the most general Bayesian decision-making setting, encompassing contextual bandits as a special case. Through numerical simulations, we illustrate how prior misspecification and the deployment of one-step look-ahead (as in KG) can impact the convergence of meta-learning in multi-armed and contextual bandits with structured and correlated priors.