Collaborating Authors

Kernel Methods

Debiased Kernel Methods Machine Learning

I propose a practical procedure based on bias correction and sample splitting to calculate confidence intervals for functionals of generic kernel methods, i.e. nonparametric estimators learned in a reproducing kernel Hilbert space (RKHS). For example, an analyst may desire confidence intervals for functionals of kernel ridge regression. I propose a bias correction that mirrors kernel ridge regression. The framework encompasses (i) evaluations over discrete domains, (ii) derivatives over continuous domains, (iii) treatment effects of discrete treatments, and (iv) incremental treatment effects of continuous treatments. For the target quantity, whether it is (i)-(iv), I prove root-n consistency, Gaussian approximation, and semiparametric efficiency by finite sample arguments. I show that the classic assumptions of RKHS learning theory also imply inference.

Understanding Higher-order Structures in Evolving Graphs: A Simplicial Complex based Kernel Estimation Approach Machine Learning

Dynamic graphs are rife with higher-order interactions, such as co-authorship relationships and protein-protein interactions in biological networks, that naturally arise between more than two nodes at once. In spite of the ubiquitous presence of such higher-order interactions, limited attention has been paid to the higher-order counterpart of the popular pairwise link prediction problem. Existing higher-order structure prediction methods are mostly based on heuristic feature extraction procedures, which work well in practice but lack theoretical guarantees. Such heuristics are primarily focused on predicting links in a static snapshot of the graph. Moreover, these heuristic-based methods fail to effectively utilize and benefit from the knowledge of latent substructures already present within the higher-order structures. In this paper, we overcome these obstacles by capturing higher-order interactions succinctly as \textit{simplices}, model their neighborhood by face-vectors, and develop a nonparametric kernel estimator for simplices that views the evolving graph from the perspective of a time process (i.e., a sequence of graph snapshots). Our method substantially outperforms several baseline higher-order prediction methods. As a theoretical achievement, we prove the consistency and asymptotic normality in terms of the Wasserstein distance of our estimator using Stein's method.

Ansatz-Independent Variational Quantum Classifier Machine Learning

The paradigm of variational quantum classifiers (VQCs) encodes \textit{classical information} as quantum states, followed by quantum processing and then measurements to generate classical predictions. VQCs are promising candidates for efficient utilization of a near-term quantum device: classifiers involving $M$-dimensional datasets can be implemented with only $\lceil \log_2 M \rceil$ qubits by using an amplitude encoding. A general framework for designing and training VQCs, however, has not been proposed, and a fundamental understanding of its power and analytical relationships with classical classifiers are not well understood. An encouraging specific embodiment of VQCs, quantum circuit learning (QCL), utilizes an ansatz: it expresses the quantum evolution operator as a circuit with a predetermined topology and parametrized gates; training involves learning the gate parameters through optimization. In this letter, we first address the open questions about VQCs and then show that they, including QCL, fit inside the well-known kernel method. Based on such correspondence, we devise a design framework of efficient ansatz-independent VQCs, which we call the unitary kernel method (UKM): it directly optimizes the unitary evolution operator in a VQC. Thus, we show that the performance of QCL is bounded from above by the UKM. Next, we propose a variational circuit realization (VCR) for designing efficient quantum circuits for a given unitary operator. By combining the UKM with the VCR, we establish an efficient framework for constructing high-performing circuits. We finally benchmark the relatively superior performance of the UKM and the VCR via extensive numerical simulations on multiple datasets.

Kernel Methods and their derivatives: Concept and perspectives for the Earth system sciences Machine Learning

Kernel methods are powerful machine learning techniques which implement generic non-linear functions to solve complex tasks in a simple way. They Have a solid mathematical background and exhibit excellent performance in practice. However, kernel machines are still considered black-box models as the feature mapping is not directly accessible and difficult to interpret.The aim of this work is to show that it is indeed possible to interpret the functions learned by various kernel methods is intuitive despite their complexity. Specifically, we show that derivatives of these functions have a simple mathematical formulation, are easy to compute, and can be applied to many different problems. We note that model function derivatives in kernel machines is proportional to the kernel function derivative. We provide the explicit analytic form of the first and second derivatives of the most common kernel functions with regard to the inputs as well as generic formulas to compute higher order derivatives. We use them to analyze the most used supervised and unsupervised kernel learning methods: Gaussian Processes for regression, Support Vector Machines for classification, Kernel Entropy Component Analysis for density estimation, and the Hilbert-Schmidt Independence Criterion for estimating the dependency between random variables. For all cases we expressed the derivative of the learned function as a linear combination of the kernel function derivative. Moreover we provide intuitive explanations through illustrative toy examples and show how to improve the interpretation of real applications in the context of spatiotemporal Earth system data cubes. This work reflects on the observation that function derivatives may play a crucial role in kernel methods analysis and understanding.

MKLpy: a python-based framework for Multiple Kernel Learning Machine Learning

Multiple Kernel Learning is a recent and powerful paradigm to learn the kernel function from data. In this paper, we introduce MKLpy, a python-based framework for Multiple Kernel Learning. The library provides Multiple Kernel Learning algorithms for classification tasks, mechanisms to compute kernel functions for different data types, and evaluation strategies. The library is meant to maximize the usability and to simplify the development of novel solutions.

On the generalization of Tanimoto-type kernels to real valued functions Machine Learning

The Tanimoto kernel (Jaccard index) is a well known tool to describe the similarity between sets of binary attributes. It has been extended to the case when the attributes are nonnegative real values. This paper introduces a more general Tanimoto kernel formulation which allows to measure the similarity of arbitrary real-valued functions. This extension is constructed by unifying the representation of the attributes via properly chosen sets. After deriving the general form of the kernel, explicit feature representation is extracted from the kernel function, and a simply way of including general kernels into the Tanimoto kernel is shown. Finally, the kernel is also expressed as a quotient of piecewise linear functions, and a smooth approximation is provided.

Ensemble Kernel Methods, Implicit Regularization and Determinantal Point Processes Machine Learning

By using the framework of Determinantal Point Processes (DPPs), some theoretical results concerning the interplay between diversity and regularization can be obtained. In this paper we show that sampling subsets with kDPPs results in implicit regularization in the context of ridgeless Kernel Regression. Furthermore, we leverage the common setup of state-of-the-art DPP algorithms to sample multiple small subsets and use them in an ensemble of ridgeless regressions. Our first empirical results indicate that ensemble of ridgeless regressors can be interesting to use for datasets including redundant information.

Kernel methods library for pattern analysis and machine learning in python Machine Learning

Kernel methods have proven to be powerful techniques for pattern analysis and machine learning (ML) in a variety of domains. However, many of their original or advanced implementations remain in Matlab. With the incredible rise and adoption of Python in the ML and data science world, there is a clear need for a well-defined library that enables not only the use of popular kernels, but also allows easy definition of customized kernels to fine-tune them for diverse applications. The kernelmethods library fills that important void in the python ML ecosystem in a domain-agnostic fashion, allowing the sample data type to be anything from numerical, categorical, graphs or a combination of them. In addition, this library provides a number of well-defined classes to make various kernel-based operations efficient (for large scale datasets), modular (for ease of domain adaptation), and inter-operable (across different ecosystems). The library is available at

Relevance Vector Machine with Weakly Informative Hyperprior and Extended Predictive Information Criterion Machine Learning

In the variational relevance vector machine, the gamma distribution is representative as a hyperprior over the noise precision of automatic relevance determination prior. Instead of the gamma hyperprior, we propose to use the inverse gamma hyperprior with a shape parameter close to zero and a scale parameter not necessary close to zero. This hyperprior is associated with the concept of a weakly informative prior. The effect of this hyperprior is investigated through regression to non-homogeneous data. Because it is difficult to capture the structure of such data with a single kernel function, we apply the multiple kernel method, in which multiple kernel functions with different widths are arranged for input data. We confirm that the degrees of freedom in a model is controlled by adjusting the scale parameter and keeping the shape parameter close to zero. A candidate for selecting the scale parameter is the predictive information criterion. However the estimated model using this criterion seems to cause over-fitting. This is because the multiple kernel method makes the model a situation where the dimension of the model is larger than the data size. To select an appropriate scale parameter even in such a situation, we also propose an extended prediction information criterion. It is confirmed that a multiple kernel relevance vector regression model with good predictive accuracy can be obtained by selecting the scale parameter minimizing extended prediction information criterion.

Efficient Tensor Kernel methods for sparse regression Machine Learning

Recently, classical kernel methods have been extended by the introduction of suitable tensor kernels so to promote sparsity in the solution of the underlying regression problem. Indeed they solve an l p -norm regularization problem, with p m/(m 1) and m even integer, which happens to be close to a lasso problem. However, a major drawback of the method is that storing tensors generally requires a considerable amount of memory, ultimately limiting its applicability. In this work we address this problem by proposing two advances. First, we directly reduce the memory requirement, by introducing a new and more efficient layout for storing the data. Second, we use Nyström-type subsampling approach, which allows for a training phase with a smaller number of data points, so to reduce the computational cost. Experiments, both on synthetic and real datasets show the effectiveness of the proposed improvements. Finally, we take care of implementing the code in C so to further speedup the computation.