Problem Solving
Expert-level protocol translation for self-driving labs Y u-Zhe Shi
Recent development in Artificial Intelligence (AI) models has propelled their application in scientific discovery, but the validation and exploration of these discoveries require subsequent empirical experimentation. The concept of self-driving laboratories promises to automate and thus boost the experimental process following AI-driven discoveries. However, the transition of experimental protocols, originally crafted for human comprehension, into formats interpretable by machines presents significant challenges, which, within the context of specific expert domain, encompass the necessity for structured as opposed to natural language, the imperative for explicit rather than tacit knowledge, and the preservation of causality and consistency throughout protocol steps. Presently, the task of protocol translation predominantly requires the manual and labor-intensive involvement of domain experts and information technology specialists, rendering the process time-intensive. To address these issues, we propose a framework that automates the protocol translation process through a three-stage workflow, which incremen-tally constructs Protocol Dependence Graphs (PDGs) that approach structured on the syntax level, completed on the semantics level, and linked on the execution level. Quantitative and qualitative evaluations have demonstrated its performance at par with that of human experts, underscoring its potential to significantly expedite and democratize the process of scientific discovery by elevating the automation capabilities within self-driving laboratories.
SoftMatcha 2: A Fast and Soft Pattern Matcher for Trillion-Scale Corpora
Yoneda, Masataka, Matsushita, Yusuke, Kamoda, Go, Suenaga, Kohei, Akiba, Takuya, Waga, Masaki, Yokoi, Sho
We present an ultra-fast and flexible search algorithm that enables search over trillion-scale natural language corpora in under 0.3 seconds while handling semantic variations (substitution, insertion, and deletion). Our approach employs string matching based on suffix arrays that scales well with corpus size. To mitigate the combinatorial explosion induced by the semantic relaxation of queries, our method is built on two key algorithmic ideas: fast exact lookup enabled by a disk-aware design, and dynamic corpus-aware pruning. We theoretically show that the proposed method suppresses exponential growth in the search space with respect to query length by leveraging statistical properties of natural language. In experiments on FineWeb-Edu (Lozhkov et al., 2024) (1.4T tokens), we show that our method achieves significantly lower search latency than existing methods: infini-gram (Liu et al., 2024), infini-gram mini (Xu et al., 2025), and SoftMatcha (Deguchi et al., 2025). As a practical application, we demonstrate that our method identifies benchmark contamination in training corpora, unidentified by existing approaches. We also provide an online demo of fast, soft search across corpora in seven languages.