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ResearchCodeBench: Benchmarking LLMs on Implementing Novel Machine Learning Research Code

Neural Information Processing Systems

Large language models (LLMs) have shown promise in transforming machine learning research, yet their capability to faithfully implement novel ideas from recent research papers--ideas unseen during pretraining--remains unclear. We introduce ResearchCodeBench, a benchmark of 212 coding challenges that evaluates LLMs' ability to translate cutting-edge ML contributions from top 2024-2025 research papers into executable code. We assessed 32 proprietary and open-source LLMs on both the full benchmark and ResearchCodeBench-HARD, a subset of 109 particularly challenging tasks.


Dense SAELatents Are Features, Not Bugs

Neural Information Processing Systems

Sparse autoencoders (SAEs) are designed to extract interpretable features from language models by enforcing a sparsity constraint. Ideally, training an SAE would yield latents that are both sparse and semantically meaningful. However, many SAE latents activate frequently (i.e., are dense), raising concerns that they may be undesirable artifacts of the training procedure. In this work, we systematically investigate the geometry, function, and origin of dense latents and show that they are not only persistent but often reflect meaningful model representations. We first demonstrate that dense latents tend to form antipodal pairs that reconstruct specific directions in the residual stream, and that ablating their subspace suppresses the emergence of new dense features in retrained SAEs--suggesting that high density features are an intrinsic property of the residual space. We then introduce a taxonomy of dense latents, identifying classes tied to position tracking, context binding, entropy regulation, letter-specific output signals, part-of-speech, and principal component reconstruction. Finally, we analyze how these features evolve across layers, revealing a shift from structural features in early layers, to semantic features in mid layers, and finally to output-oriented signals in the last layers of the model. Our findings indicate that dense latents serve functional roles in language model computation and should not be dismissed as training noise.


LaM-SLidE: Latent Space Modeling of Spatial Dynamical Systems via Linked Entities

Neural Information Processing Systems

Generative models are spearheading recent progress in deep learning, showcasing strong promise for trajectory sampling in dynamical systems as well. However, whereas latent space modeling paradigms have transformed image and video generation, similar approaches are more difficult for most dynamical systems. Such systems - from chemical molecule structures to collective human behavior - are described by interactions of entities, making them inherently linked to connectivity patterns, entity conservation, and the traceability of entities over time. Our approach, LAM-SLIDE (Latent Space Modeling of Spatial Dynamical Systems via Linked Entities), bridges the gap between: (1) keeping the traceability of individual entities in a latent system representation, and (2) leveraging the efficiency and scalability of recent advances in image and video generation, where pre-trained encoder and decoder enable generative modeling directly in latent space. The core idea of LAM-SLIDE is the introduction of identifier representations (IDs) that enable the retrieval of entity properties and entity composition from latent system representations, thus fostering traceability. Experimentally, across different domains, we show that LAM-SLIDE performs favorably in terms of speed, accuracy, and generalizability.


PreFM: Online Audio-Visual Event Parsing via Predictive Future Modeling

Neural Information Processing Systems

Audio-visual event parsing plays a crucial role in understanding multimodal video content, but existing methods typically rely on offline processing of entire videos with huge model sizes, limiting their real-time applicability. We introduce Online Audio-Visual Event Parsing (On-AVEP), a novel paradigm for parsing audio, visual, and audio-visual events by sequentially analyzing incoming video streams. The On-AVEP task necessitates models with two key capabilities: (1) Accurate online inference, to effectively distinguish events with unclear and limited context in online settings, and (2) Real-time efficiency, to balance high performance with computational constraints. To cultivate these, we propose the Predictive Future Modeling (PreFM) framework featured by (a) predictive multimodal future modeling to infer and integrate beneficial future audio-visual cues, thereby enhancing contextual understanding and (b) modality-agnostic robust representation along with focal temporal prioritization to improve precision and generalization. Extensive experiments on the UnAV-100 and LLP datasets show PreFM significantly outperforms state-of-the-art methods by a large margin with significantly fewer parameters, offering an insightful approach for real-time multimodal video understanding.


Our graph image features estrain Test distribution Gap Training distribution Invariant, Non-intuitiveness normalization Online Reference-joint difference vectors

Neural Information Processing Systems

Skeleton-based hand gesture recognition plays a crucial role in enabling intuitive human-computer interaction. Traditional methods have primarily relied on hand-crafted features--such as distances between joints or positional changes across frames--to alleviate issues from viewpoint variation or body proportion differences. However, these hand-crafted features often fail to capture the full spatio-temporal information in raw skeleton data, exhibit poor interpretability, and depend heavily on dataset-specific preprocessing, limiting generalization. In addition, normalization strategies in traditional methods, which rely on training data, can introduce domain gaps between training and testing environments, further hindering robustness in diverse real-world settings. To overcome these challenges, we exclude traditional hand-crafted features and propose Skeleton Kinematics Extraction Through Coordinated grapH (SKETCH), a novel framework that directly utilizes raw four-dimensional (time, x, y, and z) skeleton sequences and transforms them into intuitive visual graph representations.


Generalization or Hallucination Understanding Out of Context Reasoning in Transformers

Neural Information Processing Systems

Large language models (LLMs) can acquire new knowledge through fine-tuning, but this process exhibits a puzzling duality: models can generalize remarkably from new facts, yet are also prone to hallucinating incorrect information. However, the reasons for this phenomenon remain poorly understood. In this work, we argue that both behaviors stem from a single mechanism known as out-of-context reasoning (OCR): the ability to deduce implications by associating concepts, even those without a causal link. Our experiments across five prominent LLMs confirm that OCR indeed drives both generalization and hallucination, depending on whether the associated concepts are causally related. To build a rigorous theoretical understanding of this phenomenon, we then formalize OCR as a synthetic factual recall task. We empirically show that a one-layer single-head attention-only transformer with factorized output and value matrices can learn to solve this task, while a model with combined weights cannot, highlighting the crucial role of matrix factorization. Our theoretical analysis shows that the OCR capability can be attributed to the implicit bias of gradient descent, which favors solutions that minimize the nuclear norm of the combined output-value matrix. This structure explains why the model learns to associate facts and implications with high sample efficiency, regardless of whether the correlation is causal or merely spurious. Ultimately, our work provides a theoretical foundation for understanding the OCR phenomenon, offering a new lens for analyzing and mitigating undesirable behaviors from knowledge injection.


OPENCUA: Open Foundations for Computer-Use Agents

Neural Information Processing Systems

Vision-language models have demonstrated impressive capabilities as computer-use agents (CUAs) capable of automating diverse computer tasks. As their commercial potential grows, critical details of the most capable CUA systems remain closed. As these agents will increasingly mediate digital interactions and execute consequential decisions on our behalf, the research community needs access to open CUA frameworks to study their capabilities, limitations, and risks. To bridge this gap, we propose OPENCUA, a comprehensive open-source framework for scaling CUA data and foundation models. Our framework consists of: (1) an annotation infrastructure that seamlessly captures human computer-use demonstrations; (2) AGENTNET, the first large-scale computer-use task dataset spanning 3 operating systems and 200+ applications and websites; (3) a scalable pipeline that transforms demonstrations into state-action pairs with reflective long Chain-of-Thought reasoning that sustain robust performance gains as data scales.


Reasoning Path Compression: Compressing Generation Trajectories for Efficient LLMReasoning

Neural Information Processing Systems

Recent reasoning-focused language models achieve high accuracy by generating lengthy intermediate reasoning paths before producing final answers. While this approach is effective in solving problems that require logical thinking, long reasoning paths significantly increase memory usage and reduce throughput of token generation, limiting the practical deployment of such models. We propose Reasoning Path Compression (RPC), a training-free method that accelerates inference by leveraging the semantic sparsity of reasoning paths. RPC periodically compresses the KV cache by retaining cache entries that receive high importance score, which are computed using a selector window composed of recently generated queries. Experiments show that RPC improves generation throughput of QwQ-32B by up to 1.60 compared to the inference with full KV cache, with an accuracy drop of 1.2% on the AIME 2024 benchmark. Our findings demonstrate that semantic sparsity in reasoning traces can be effectively exploited for compression, offering a practical path toward efficient deployment of reasoning LLMs.


SHF: Symmetrical Hierarchical Forest with Pretrained Vision Transformer Encoder for High-Resolution Medical Segmentation

Neural Information Processing Systems

This paper presents a novel approach to addressing the long-sequence problem in high-resolution medical images for Vision Transformers (ViTs). Using smaller patches as tokens can enhance ViT performance, but quadratically increases computation and memory requirements. Therefore, the common practice for applying ViTs to high-resolution images is either to: (a) employ complex sub-quadratic attention schemes or (b) use large to medium-sized patches and rely on additional mechanisms within the model to capture the spatial hierarchy of details. We propose Symmetrical Hierarchical Forest (SHF), a lightweight approach that adaptively patches the input image to increase token information density and encode hierarchical spatial structures into the input embedding. We then apply a reverse depatching scheme to the output embeddings of the transformer encoder, eliminating the need for convolution-based decoders. Unlike previous methods that modify attention mechanisms or use a complex hierarchy of interacting models, SHFcan be retrofitted to any ViT model to allow it to learn the hierarchical structure of details in high-resolution images without requiring architectural changes. Experimental results demonstrate significant gains in computational efficiency and performance: on the PAIPWSI dataset, we achieved a 3 32 speedup or a 2.95% 7.03% increase in accuracy (measured by Dice score) at a 64K2 resolution with the same computational budget, compared to state-of-the-art production models. On the 3D medical datasets BTCV and KiTS, training was 6 faster, with accuracy gains of 6.93% and 5.9%, respectively, compared to models without SHF.


Enhancing Graph Classification Robustness with Singular Pooling

Neural Information Processing Systems

Graph Neural Networks (GNNs) have achieved strong performance across a range of graph representation learning tasks, yet their adversarial robustness in graph classification remains underexplored compared to node classification. While most existing defenses focus on the message-passing component, this work investigates the overlooked role of pooling operations in shaping robustness. We present a theoretical analysis of standard flat pooling methods (sum, average and max), deriving upper bounds on their adversarial risk and identifying their vulnerabilities under different attack scenarios and graph structures. Motivated by these insights, we propose Robust Singular Pooling (RS-Pool), a novel pooling strategy that leverages the dominant singular vector of the node embedding matrix to construct a robust graph-level representation. We theoretically investigate the robustness of RS-Pool and interpret the resulting bound leading to improved understanding of our proposed pooling operator. While our analysis centers on Graph Convolutional Networks (GCNs), RS-Pool is model-agnostic and can be implemented efficiently via power iteration. Empirical results on real-world benchmarks show that RS-Pool provides better robustness than the considered pooling methods when subject to state-of-the-art adversarial attacks while maintaining competitive clean accuracy. Our code is publicly available at: https://github.com/king/rs-pool.