Each year the AAAI recognizes a group of individuals who have made significant, sustained contributions to the field of artificial intelligence by appointing them as Fellows. Over the course of the next few months, we'll be talking to some of the 2026 AAAI Fellows. In this interview, we met with Tanya Berger-Wolf, who was elected as a Fellow . We found out about her latest research developing a foundation model for biology, the insights this model can provide, interesting collaborations over the years, and what the future has in store. Could you start with a quick introduction and tell us about the broad area that you're working in? My area of research is in AI for ecology, biodiversity, and conservation.

There has been increasing research interest in AI/ML for social impact, and correspondingly more publication venues refining review criteria for practice-driven AI/ML research. However, these review guidelines tend to most concretely recognize projects that simultaneously achieve deployment and novel ML methodological innovation. We argue that this introduces incentives for researchers that undermine the sustainability of a broader research ecosystem of social impact, which benefits from projects that make contributions on one front (applied methodological) that may better meet project partner needs. Our position is that researchers and reviewers in machine learning for social impact must simultaneously adopt: 1) a more expansive conception of social impacts beyond deployment and 2) more rigorous evaluations of the impact of deployed systems.

Modern AI systems struggle most in environments where reliability is critical - scenes with smoke, poor visibility, and structural deformation. Each year, tens of thousands of firefighters are injured on duty, often due to breakdowns in situational perception. We introduce Fire360, a benchmark for evaluating perception and reasoning in safety-critical firefighting scenarios. The dataset includes 228 360 videos from professional training sessions under diverse conditions (e.g., low light, thermal distortion), annotated with action segments, object locations, and degradation metadata. Fire360 supports five tasks: Visual Question Answering, Temporal Action Captioning, Object Localization, Safety-Critical Reasoning, and Transformed Object Retrieval (TOR). TOR tests whether models can match pristine exemplars to fire-damaged counterparts in unpaired scenes, evaluating episodic memory under irreversible visual transformations. While human experts achieve 83.5% on TOR, models like GPT-4o lag significantly, exposing failures in reasoning under degradation. By releasing Fire360 and its evaluation suite, we aim to advance models that not only see, but also remember, reason, and act under uncertainty.

Deciphering how visual stimuli are transformed into cortical responses is a fundamental challenge in computational neuroscience. This visual-to-neural mapping is inherently a one-to-many relationship, as identical visual inputs reliably evoke variable hemodynamic responses across trials, contexts, and subjects. However, existing deterministic methods struggle to simultaneously model this biological variability while capturing the underlying functional consistency that encodes stimulus information. To address these limitations, we propose SynBrain, a generative framework that simulates the transformation from visual semantics to neural responses in a probabilistic and biologically interpretable manner. SynBrain introduces two key components: (i) BrainVAE models neural representations as continuous probability distributions via probabilistic learning while maintaining functional consistency through visual semantic constraints; (ii) A Semantic-to-Neural Mapper acts as a semantic transmission pathway, projecting visual semantics into the neural response manifold to facilitate high-fidelity fMRI synthesis. Experimental results demonstrate that SynBrain surpasses state-of-the-art methods in subject-specific visual-to-fMRI encoding performance. Furthermore, SynBrain adapts efficiently to new subjects with few-shot data and synthesizes high-quality fMRI signals that are effective in improving data-limited fMRI-to-image decoding performance. Beyond that, SynBrain reveals functional consistency across trials and subjects, with synthesized signals capturing interpretable patterns shaped by biological neural variability.

Availability attacks, or unlearnable examples, are defensive techniques that allow data owners to modify their datasets in ways that prevent unauthorized machine learning models from learning effectively while maintaining the data's intended functionality. It has led to the release of popular black-box tools (e.g., APIs) for users to upload personal data and receive protected counterparts. In this work, we show that such black-box protections can be substantially compromised if a small set of unprotected in-distribution data is available. Specifically, we propose a novel threat model of protection leakage, where an adversary can (1) easily acquire (unprotected, protected) pairs by querying the black-box protections with a small unprotected dataset; and (2) train a diffusion bridge model to build a mapping between unprotected and protected data. This mapping, termed BridgePure, can effectively remove the protection from any previously unseen data within the same distribution. BridgePure demonstrates superior purification performance on classification and style mimicry tasks, exposing critical vulnerabilities in black-box data protection. We suggest that practitioners implement multi-level countermeasures to mitigate such risks.

Watermarking is widely regarded as a promising defense against the misuse of large language models (LLMs); however, existing methods are fundamentally constrained by their vulnerability to scrubbing and spoofing attacks. This vulnerability stems from an inherent trade-off governed by watermark window size: smaller windows resist scrubbing better but are easier to reverse-engineer, enabling low-cost statistics-based spoofing attacks. This work expands the trade-off boundary by introducing a novel mechanism, equivalent texture keys, where multiple tokens within a watermark window can independently support the detection.

The application of AI in psychiatric diagnosis faces significant challenges, including the subjective nature of mental health assessments, symptom overlap across disorders, and privacy constraints limiting data availability. To address these issues, we present MoodAngels, the first specialized multi-agent framework for mood disorder diagnosis. Our approach combines granular-scale analysis of clinical assessments with a structured verification process, enabling more accurate interpretation of complex psychiatric data. Complementing this framework, we introduce MoodSyn, an open-source dataset of 1,173 synthetic psychiatric cases that preserves clinical validity while ensuring patient privacy. Experimental results demonstrate that MoodAngels outperforms conventional methods, with our baseline agent achieving 12.3\% higher accuracy than GPT-4o on real-world cases, and our full multi-agent system delivering further improvements. Together, these contributions provide both an advanced diagnostic tool and a critical research resource for computational psychiatry, bridging important gaps in AI-assisted mental health assessment.

The growing importance of mRNA therapeutics and synthetic biology highlights the need for models that capture the latent structure of synonymous codon (different triplets encoding the same amino acid) usage, which subtly modulates translation efficiency and gene expression. While recent efforts incorporate codon-level inductive biases through auxiliary objectives, they often fall short of explicitly modeling the structured relationships that arise from the genetic code's inherent symmetries. We introduce Equi mRNA, the first codon level equivariant mRNA language model that explicitly encodes synonymous codon symmetries as cyclic subgroups of 2D Special Orthogonal matrix ($\mathrm{SO}(2)$). By combining group theoretic priors with an auxiliary equivariance loss and symmetry aware pooling, Equi mRNA learns biologically grounded representations that outperform vanilla baselines across multiple axes. On downstream property prediction tasks including expression, stability, and riboswitch switching Equi mRNA delivers up to $\approx$ 10\% improvements in accuracy. In sequence generation, it produces mRNA constructs that are up to $\approx$ 4$\times$ more realistic under Fréchet BioDistance metrics and $\approx$ 28\% better preserve functional properties compared to vanilla baseline. Interpretability analyses further reveal that learned codon rotation distributions recapitulate known GC content biases and tRNA abundance patterns, offering novel insights into codon usage. Equi mRNA establishes a new biologically principled paradigm for mRNA modeling, with significant implications for the design of next generation therapeutics.

The Poisson Generalized Linear Model (GLM) is a foundational tool for analyzing neural spike train data. However, standard implementations rely on discretizing spike times into binned count data, limiting temporal resolution and scalability. Here, we develop stochastic optimization methods and polynomial approximations to the continuous-time analog of these models, and show them to be advantageous over their discrete-time counterparts. Further, we propose using a set of exponentially scaled Laguerre polynomials as an orthogonal temporal basis, which improves filter identification and yields closed-form integral solutions under the polynomial approximation. Applied to both synthetic and real spike-time data from rodent hippocampus, our methods demonstrate superior accuracy and scalability compared to traditional binned GLMs, enabling functional connectivity inference in large-scale neural recordings that are temporally precise on the order of synaptic dynamical timescales. We provide open-source implementations of both MC and PA estimators, optimized for GPU acceleration, to facilitate adoption in the neuroscience community.

Predicting protein function from sequence is a central challenge in computational biology. While existing methods rely heavily on structured ontologies or similarity-based techniques, they often lack the flexibility to express structure-free functional descriptions and novel biological functions. In this work, we introduce Prot2Text-V2, a novel multimodal sequence-to-text model that generates free-form natural language descriptions of protein function directly from amino acid sequences. Our method combines a protein language model as a sequence encoder (ESM-3B) and a decoder-only language model (LLaMA-3.1-8B-Instruct)