We provide a method for mass meta-analysis in a neuroinformatics database containing stereotaxic Talairach coordinates from neuroimaging experiments. Database labels are used to group the individual experiments, e.g., according to cognitive function, and the consistent pattern of the experiments within the groups are determined.

Learning algorithms have enjoyed numerous successes in robotic control tasks. In problems with time-varying dynamics, online learning methods have also proved to be a powerful tool for automatically tracking and/or adapting to the changing circumstances. However, for safety-critical applications such as airplane flight, the adoption of these algorithms has been significantly hampered by their lack of safety, such as "stability," guarantees. Rather than trying to show difficult, a priori, stability guarantees for specific learning methods, in this paper we propose a method for "monitoring" the controllers suggested by the learning algorithm online, and rejecting controllers leading to instability. We prove that even if an arbitrary online learning method is used with our algorithm to control a linear dynamical system, the resulting system is stable.

Each of these problems can be solved using a spatial scan statistic (Kulldorff, 1997), where we compute the maximum of a likelihood ratio statistic over all spatial regions, and find the significance of this region by randomization. However, computing the scan statistic for all spatial regions is generally computationally infeasible, so we introduce a novel fast spatial scan algorithm, generalizing the 2D scan algorithm of (Neill and Moore, 2004) to arbitrary dimensions. Our new multidimensional multiresolution algorithm allows us to find spatial clusters up to 1400x faster than the naive spatial scan, without any loss of accuracy.

A typical neuron in visual cortex receives most inputs from other cortical neurons with a roughly similar stimulus preference. Does this arrangement of inputs allow efficient readout of sensory information by the target cortical neuron? We address this issue by using simple modelling of neuronal population activity and information theoretic tools. We find that efficient synaptic information transmission requires that the tuning curve of the afferent neurons is approximately as wide as the spread of stimulus preferences of the afferent neurons reaching the target neuron. By meta analysis of neurophysiological data we found that this is the case for cortico-cortical inputs to neurons in visual cortex. We suggest that the organization of V1 cortico-cortical synaptic inputs allows optimal information transmission.

The standard approach to the classification of objects is to consider the examples as independent and identically distributed (iid). In many real world settings, however, this assumption is not valid, because a topographical relationship exists between the objects. In this contribution we consider the special case of image segmentation, where the objects are pixels and where the underlying topography is a 2D regular rectangular grid. We introduce a classification method which not only uses measured vectorial feature information but also the label configuration within a topographic neighborhood. Due to the resulting dependence between the labels of neighboring pixels, a collective classification of a set of pixels becomes necessary. We propose a new method called'Topographic Support Vector Machine' (TSVM), which is based on a topographic kernel and a self-consistent solution to the label assignment shown to be equivalent to a recurrent neural network. The performance of the algorithm is compared to a conventional SVM on a cell image segmentation task.

Coreference analysis, also known as record linkage or identity uncertainty, is a difficult and important problem in natural language processing, databases, citation matching and many other tasks. This paper introduces several discriminative, conditional-probability models for coreference analysis, all examples of undirected graphical models. Unlike many historical approaches to coreference, the models presented here are relational--they do not assume that pairwise coreference decisions should be made independently from each other. Unlike other relational models of coreference that are generative, the conditional model here can incorporate a great variety of features of the input without having to be concerned about their dependencies--paralleling the advantages of conditional random fields over hidden Markov models.

We propose a "soft greedy" learning algorithm for building small conjunctions of simple threshold functions, called rays, defined on single real-valued attributes. We also propose a PAC-Bayes risk bound which is minimized for classifiers achieving a nontrivial tradeoff between sparsity (the number of rays used) and the magnitude of the separating margin of each ray. Finally, we test the soft greedy algorithm on four DNA micro-array data sets.

Planning algorithms designed for deterministic worlds, such as A* search, usually run much faster than algorithms designed for worlds with uncertain action outcomes, such as value iteration. Real-world planning problems often exhibit uncertainty, which forces us to use the slower algorithms to solve them. Many real-world planning problems exhibit sparse uncertainty: there are long sequences of deterministic actions which accomplish tasks like moving sensor platforms into place, interspersed with a small number of sensing actions which have uncertain outcomes. In this paper we describe a new planning algorithm, called MCP (short for MDP Compression Planning), which combines A* search with value iteration for solving Stochastic Shortest Path problem in MDPs with sparse stochasticity. We present experiments which show that MCP can run substantially faster than competing planners in domains with sparse uncertainty; these experiments are based on a simulation of a ground robot cooperating with a helicopter to fill in a partial map and move to a goal location.

Areas of the brain involved in various forms of memory exhibit patterns of neural activity quite unlike those in canonical computational models. We show how to use well-founded Bayesian probabilistic autoassociative recall to derive biologically reasonable neuronal dynamics in recurrently coupled models, together with appropriate values for parameters such as the membrane time constant and inhibition. We explicitly treat two cases. One arises from a standard Hebbian learning rule, and involves activity patterns that are coded by graded firing rates. The other arises from a spike timing dependent learning rule, and involves patterns coded by the phase of spike times relative to a coherent local field potential oscillation. Our model offers a new and more complete understanding of how neural dynamics may support autoassociation.

The correction of bias in magnetic resonance images is an important problem in medical image processing. Most previous approaches have used a maximum likelihood method to increase the likelihood of the pixels in a single image by adaptively estimating a correction to the unknown image bias field. The pixel likelihoods are defined either in terms of a preexisting tissue model, or non-parametrically in terms of the image's own pixel values. In both cases, the specific location of a pixel in the image is not used to calculate the likelihoods. We suggest a new approach in which we simultaneously eliminate the bias from a set of images of the same anatomy, but from different patients. We use the statistics from the same location across different images, rather than within an image, to eliminate bias fields from all of the images simultaneously. The method builds a "multi-resolution" nonparametric tissue model conditioned on image location while eliminating the bias fields associated with the original image set.