Representing distributions over permutations can be a daunting task due to the fact that the number of permutations of $n$ objects scales factorially in $n$. One recent way that has been used to reduce storage complexity has been to exploit probabilistic independence, but as we argue, full independence assumptions impose strong sparsity constraints on distributions and are unsuitable for modeling rankings. We identify a novel class of independence structures, called \emph{riffled independence}, encompassing a more expressive family of distributions while retaining many of the properties necessary for performing efficient inference and reducing sample complexity. In riffled independence, one draws two permutations independently, then performs the \emph{riffle shuffle}, common in card games, to combine the two permutations to form a single permutation. Within the context of ranking, riffled independence corresponds to ranking disjoint sets of objects independently, then interleaving those rankings. In this paper, we provide a formal introduction to riffled independence and present algorithms for using riffled independence within Fourier-theoretic frameworks which have been explored by a number of recent papers. Additionally, we propose an automated method for discovering sets of items which are riffle independent from a training set of rankings. We show that our clustering-like algorithms can be used to discover meaningful latent coalitions from real preference ranking datasets and to learn the structure of hierarchically decomposable models based on riffled independence.

Objectives: Text categorization has been used in biomedical informatics for identifying documents containing relevant topics of interest. We developed a simple method that uses a chi-square-based scoring function to determine the likelihood of MEDLINE citations containing genetic relevant topic. Methods: Our procedure requires construction of a genetic and a nongenetic domain document corpus. We used MeSH descriptors assigned to MEDLINE citations for this categorization task. We compared frequencies of MeSH descriptors between two corpora applying chi-square test. A MeSH descriptor was considered to be a positive indicator if its relative observed frequency in the genetic domain corpus was greater than its relative observed frequency in the nongenetic domain corpus. The output of the proposed method is a list of scores for all the citations, with the highest score given to those citations containing MeSH descriptors typical for the genetic domain. Results: Validation was done on a set of 734 manually annotated MEDLINE citations. It achieved predictive accuracy of 0.87 with 0.69 recall and 0.64 precision. We evaluated the method by comparing it to three machine learning algorithms (support vector machines, decision trees, na\"ive Bayes). Although the differences were not statistically significantly different, results showed that our chi-square scoring performs as good as compared machine learning algorithms. Conclusions: We suggest that the chi-square scoring is an effective solution to help categorize MEDLINE citations. The algorithm is implemented in the BITOLA literature-based discovery support system as a preprocessor for gene symbol disambiguation process.

Class prediction is an important application of microarray gene expression data analysis. The high-dimensionality of microarray data, where number of genes (variables) is very large compared to the number of samples (obser- vations), makes the application of many prediction techniques (e.g., logistic regression, discriminant analysis) difficult. An efficient way to solve this prob- lem is by using dimension reduction statistical techniques. Increasingly used in psychology-related applications, Rasch model (RM) provides an appealing framework for handling high-dimensional microarray data. In this paper, we study the potential of RM-based modeling in dimensionality reduction with binarized microarray gene expression data and investigate its prediction ac- curacy in the context of class prediction using linear discriminant analysis. Two different publicly available microarray data sets are used to illustrate a general framework of the approach. Performance of the proposed method is assessed by re-randomization scheme using principal component analysis (PCA) as a benchmark method. Our results show that RM-based dimension reduction is as effective as PCA-based dimension reduction. The method is general and can be applied to the other high-dimensional data problems.

We present a method for the reconstruction of networks, based on the order of nodes visited by a stochastic branching process. Our algorithm reconstructs a network of minimal size that ensures consistency with the data. Crucially, we show that global consistency with the data can be achieved through purely local considerations, inferring the neighbourhood of each node in turn. The optimisation problem solved for each individual node can be reduced to a Set Covering Problem, which is known to be NP-hard but can be approximated well in practice. We then extend our approach to account for noisy data, based on the Minimum Description Length principle. We demonstrate our algorithms on synthetic data, generated by an SIR-like epidemiological model.

Standard hybrid learners that use domain knowledge require stronger knowledge that is hard and expensive to acquire. However, weaker domain knowledge can benefit from prior knowledge while being cost effective. Weak knowledge in the form of feature relative importance (FRI) is presented and explained. Feature relative importance is a real valued approximation of a feature's importance provided by experts. Advantage of using this knowledge is demonstrated by IANN, a modified multilayer neural network algorithm. IANN is a very simple modification of standard neural network algorithm but attains significant performance gains. Experimental results in the field of molecular biology show higher performance over other empirical learning algorithms including standard backpropagation and support vector machines. IANN performance is even comparable to a theory refinement system KBANN that uses stronger domain knowledge. This shows Feature relative importance can improve performance of existing empirical learning algorithms significantly with minimal effort.

We propose automatically learning probabilistic Hierarchical Task Networks (pH-TNs) in order to capture a user's preferences on plans, by observing only the user's behavior. HTNs are a common choice of representation for a variety of purposes in planning, including work on learning in planning. Our contributions are (a) learning structure and (b) representing preferences. In contrast, prior work employing HTNs considers learning method preconditions (instead of structure) and representing domain physics or search control knowledge (rather than preferences). Initially we will assume that the observed distribution of plans is an accurate representation of user preference, and then generalize to the situation where feasibility constraints frequently prevent the execution of preferred plans. In order to learn a distribution on plans we adapt an Expectation-Maximization (EM) technique from the discipline of (probabilistic) grammar induction, taking the perspective of task reductions as productions in a context-free grammar over primitive actions. To account for the difference between the distributions of possible and preferred plans we subsequently modify this core EM technique, in short, by rescaling its input.

We consider the empirical risk minimization problem for linear supervised learning, with regularization by structured sparsity-inducing norms. These are defined as sums of Euclidean norms on certain subsets of variables, extending the usual $\ell_1$-norm and the group $\ell_1$-norm by allowing the subsets to overlap. This leads to a specific set of allowed nonzero patterns for the solutions of such problems. We first explore the relationship between the groups defining the norm and the resulting nonzero patterns, providing both forward and backward algorithms to go back and forth from groups to patterns. This allows the design of norms adapted to specific prior knowledge expressed in terms of nonzero patterns. We also present an efficient active set algorithm, and analyze the consistency of variable selection for least-squares linear regression in low and high-dimensional settings.

Paraphrasing methods recognize, generate, or extract phrases, sentences, or longer natural language expressions that convey almost the same information. Textual entailment methods, on the other hand, recognize, generate, or extract pairs of natural language expressions, such that a human who reads (and trusts) the first element of a pair would most likely infer that the other element is also true. Paraphrasing can be seen as bidirectional textual entailment and methods from the two areas are often similar. Both kinds of methods are useful, at least in principle, in a wide range of natural language processing applications, including question answering, summarization, text generation, and machine translation. We summarize key ideas from the two areas by considering in turn recognition, generation, and extraction methods, also pointing to prominent articles and resources.

This paper reviews the overview of the dynamic shortest path routing problem and the various neural networks to solve it. Different shortest path optimization problems can be solved by using various neural networks algorithms. The routing in packet switched multi-hop networks can be described as a classical combinatorial optimization problem i.e. a shortest path routing problem in graphs. The survey shows that the neural networks are the best candidates for the optimization of dynamic shortest path routing problems due to their fastness in computation comparing to other softcomputing and metaheuristics algorithms

Vast amounts of text on the Web are unstructured and ungrammatical, such as classified ads, auction listings, forum postings, etc. We call such text posts. Despite their inconsistent structure and lack of grammar, posts are full of useful information. This paper presents work on semi-automatically building tables of relational information, called reference sets, by analyzing such posts directly. Reference sets can be applied to a number of tasks such as ontology maintenance and information extraction. Our reference-set construction method starts with just a small amount of background knowledge, and constructs tuples representing the entities in the posts to form a reference set. We also describe an extension to this approach for the special case where even this small amount of background knowledge is impossible to discover and use. To evaluate the utility of the machine-constructed reference sets, we compare them to manually constructed reference sets in the context of reference-set-based information extraction. Our results show the reference sets constructed by our method outperform manually constructed reference sets. We also compare the reference-set-based extraction approach using the machine-constructed reference set to supervised extraction approaches using generic features. These results demonstrate that using machine-constructed reference sets outperforms the supervised methods, even though the supervised methods require training data.