Industry
Fully Automated Myocardial Infarction Classification using Ordinary Differential Equations
Portable, Wearable and Wireless electrocardiogram (ECG) Systems have the potential to be used as point-of-care for cardiovascular disease diagnostic systems. Such wearable and wireless ECG systems require automatic detection of cardiovascular disease. Even in the primary care, automation of ECG diagnostic systems will improve efficiency of ECG diagnosis and reduce the minimal training requirement of local healthcare workers. However, few fully automatic myocardial infarction (MI) disease detection algorithms have well been developed. This paper presents a novel automatic MI classification algorithm using second order ordinary differential equation (ODE) with time varying coefficients, which simultaneously captures morphological and dynamic feature of highly correlated ECG signals. By effectively estimating the unobserved state variables and the parameters of the second order ODE, the accuracy of the classification was significantly improved. The estimated time varying coefficients of the second order ODE were used as an input to the support vector machine (SVM) for the MI classification. The proposed method was applied to the PTB diagnostic ECG database within Physionet. The overall sensitivity, specificity, and classification accuracy of 12 lead ECGs for MI binary classifications were 98.7%, 96.4% and 98.3%, respectively. We also found that even using one lead ECG signals, we can reach accuracy as high as 97%. Multiclass MI classification is a challenging task but the developed ODE approach for 12 lead ECGs coupled with multiclass SVM reached 96.4% accuracy for classifying 5 subgroups of MI and healthy controls.
Screening Rules for Overlapping Group Lasso
Recently, to solve large-scale lasso and group lasso problems, screening rules have been developed, the goal of which is to reduce the problem size by efficiently discarding zero coefficients using simple rules independently of the others. However, screening for overlapping group lasso remains an open challenge because the overlaps between groups make it infeasible to test each group independently. In this paper, we develop screening rules for overlapping group lasso. To address the challenge arising from groups with overlaps, we take into account overlapping groups only if they are inclusive of the group being tested, and then we derive screening rules, adopting the dual polytope projection approach. This strategy allows us to screen each group independently of each other. In our experiments, we demonstrate the efficiency of our screening rules on various datasets.
Online and Stochastic Gradient Methods for Non-decomposable Loss Functions
Kar, Purushottam, Narasimhan, Harikrishna, Jain, Prateek
Modern applications in sensitive domains such as biometrics and medicine frequently require the use of non-decomposable loss functions such as precision@k, F-measure etc. Compared to point loss functions such as hinge-loss, these offer much more fine grained control over prediction, but at the same time present novel challenges in terms of algorithm design and analysis. In this work we initiate a study of online learning techniques for such non-decomposable loss functions with an aim to enable incremental learning as well as design scalable solvers for batch problems. To this end, we propose an online learning framework for such loss functions. Our model enjoys several nice properties, chief amongst them being the existence of efficient online learning algorithms with sublinear regret and online to batch conversion bounds. Our model is a provable extension of existing online learning models for point loss functions. We instantiate two popular losses, prec@k and pAUC, in our model and prove sublinear regret bounds for both of them. Our proofs require a novel structural lemma over ranked lists which may be of independent interest. We then develop scalable stochastic gradient descent solvers for non-decomposable loss functions. We show that for a large family of loss functions satisfying a certain uniform convergence property (that includes prec@k, pAUC, and F-measure), our methods provably converge to the empirical risk minimizer. Such uniform convergence results were not known for these losses and we establish these using novel proof techniques. We then use extensive experimentation on real life and benchmark datasets to establish that our method can be orders of magnitude faster than a recently proposed cutting plane method.
A General Stochastic Algorithmic Framework for Minimizing Expensive Black Box Objective Functions Based on Surrogate Models and Sensitivity Analysis
Wang, Yilun, Shoemaker, Christine A.
We are focusing on bound constrained global optimization problems, whose objective functions are computationally expensive black-box functions and have multiple local minima. The recently popular Metric Stochastic Response Surface (MSRS) algorithm proposed by \cite{Regis2007SRBF} based on adaptive or sequential learning based on response surfaces is revisited and further extended for better performance in case of higher dimensional problems. Specifically, we propose a new way to generate the candidate points which the next function evaluation point is picked from according to the metric criteria, based on a new definition of distance, and prove the global convergence of the corresponding. Correspondingly, a more adaptive implementation of MSRS, named "SO-SA", is presented. "SO-SA" is is more likely to perturb those most sensitive coordinates when generating the candidate points, instead of perturbing all coordinates simultaneously. Numerical experiments on both synthetic problems and real problems demonstrate the advantages of our new algorithm, compared with many state of the art alternatives.}
Demixed principal component analysis of population activity in higher cortical areas reveals independent representation of task parameters
Kobak, Dmitry, Brendel, Wieland, Constantinidis, Christos, Feierstein, Claudia E., Kepecs, Adam, Mainen, Zachary F., Romo, Ranulfo, Qi, Xue-Lian, Uchida, Naoshige, Machens, Christian K.
Neurons in higher cortical areas, such as the prefrontal cortex, are known to be tuned to a variety of sensory and motor variables. The resulting diversity of neural tuning often obscures the represented information. Here we introduce a novel dimensionality reduction technique, demixed principal component analysis (dPCA), which automatically discovers and highlights the essential features in complex population activities. We reanalyze population data from the prefrontal areas of rats and monkeys performing a variety of working memory and decision-making tasks. In each case, dPCA summarizes the relevant features of the population response in a single figure. The population activity is decomposed into a few demixed components that capture most of the variance in the data and that highlight dynamic tuning of the population to various task parameters, such as stimuli, decisions, rewards, etc. Moreover, dPCA reveals strong, condition-independent components of the population activity that remain unnoticed with conventional approaches.
Bayesian matrix completion: prior specification
Alquier, Pierre, Cottet, Vincent, Chopin, Nicolas, Rousseau, Judith
Low-rank matrix estimation from incomplete measurements recently received increased attention due to the emergence of several challenging applications, such as recommender systems; see in particular the famous Netflix challenge. While the behaviour of algorithms based on nuclear norm minimization is now well understood, an as yet unexplored avenue of research is the behaviour of Bayesian algorithms in this context. In this paper, we briefly review the priors used in the Bayesian literature for matrix completion. A standard approach is to assign an inverse gamma prior to the singular values of a certain singular value decomposition of the matrix of interest; this prior is conjugate. However, we show that two other types of priors (again for the singular values) may be conjugate for this model: a gamma prior, and a discrete prior. Conjugacy is very convenient, as it makes it possible to implement either Gibbs sampling or Variational Bayes. Interestingly enough, the maximum a posteriori for these different priors is related to the nuclear norm minimization problems. We also compare all these priors on simulated datasets, and on the classical MovieLens and Netflix datasets.
Low-Rank Modeling and Its Applications in Image Analysis
Zhou, Xiaowei, Yang, Can, Zhao, Hongyu, Yu, Weichuan
Low-rank modeling generally refers to a class of methods that solve problems by representing variables of interest as low-rank matrices. It has achieved great success in various fields including computer vision, data mining, signal processing and bioinformatics. Recently, much progress has been made in theories, algorithms and applications of low-rank modeling, such as exact low-rank matrix recovery via convex programming and matrix completion applied to collaborative filtering. These advances have brought more and more attentions to this topic. In this paper, we review the recent advance of low-rank modeling, the state-of-the-art algorithms, and related applications in image analysis. We first give an overview to the concept of low-rank modeling and challenging problems in this area. Then, we summarize the models and algorithms for low-rank matrix recovery and illustrate their advantages and limitations with numerical experiments. Next, we introduce a few applications of low-rank modeling in the context of image analysis. Finally, we conclude this paper with some discussions.
A Spectral Framework for Anomalous Subgraph Detection
Miller, Benjamin A., Beard, Michelle S., Wolfe, Patrick J., Bliss, Nadya T.
A wide variety of application domains are concerned with data consisting of entities and their relationships or connections, formally represented as graphs. Within these diverse application areas, a common problem of interest is the detection of a subset of entities whose connectivity is anomalous with respect to the rest of the data. While the detection of such anomalous subgraphs has received a substantial amount of attention, no application-agnostic framework exists for analysis of signal detectability in graph-based data. In this paper, we describe a framework that enables such analysis using the principal eigenspace of a graph's residuals matrix, commonly called the modularity matrix in community detection. Leveraging this analytical tool, we show that the framework has a natural power metric in the spectral norm of the anomalous subgraph's adjacency matrix (signal power) and of the background graph's residuals matrix (noise power). We propose several algorithms based on spectral properties of the residuals matrix, with more computationally expensive techniques providing greater detection power. Detection and identification performance are presented for a number of signal and noise models, including clusters and bipartite foregrounds embedded into simple random backgrounds as well as graphs with community structure and realistic degree distributions. The trends observed verify intuition gleaned from other signal processing areas, such as greater detection power when the signal is embedded within a less active portion of the background. We demonstrate the utility of the proposed techniques in detecting small, highly anomalous subgraphs in real graphs derived from Internet traffic and product co-purchases.
Online Energy Price Matrix Factorization for Power Grid Topology Tracking
Kekatos, Vassilis, Giannakis, Georgios B., Baldick, Ross
Grid security and open markets are two major smart grid goals. Transparency of market data facilitates a competitive and efficient energy environment, yet it may also reveal critical physical system information. Recovering the grid topology based solely on publicly available market data is explored here. Real-time energy prices are calculated as the Lagrange multipliers of network-constrained economic dispatch; that is, via a linear program (LP) typically solved every 5 minutes. Granted the grid Laplacian is a parameter of this LP, one could infer such a topology-revealing matrix upon observing successive LP dual outcomes. The matrix of spatio-temporal prices is first shown to factor as the product of the inverse Laplacian times a sparse matrix. Leveraging results from sparse matrix decompositions, topology recovery schemes with complementary strengths are subsequently formulated. Solvers scalable to high-dimensional and streaming market data are devised. Numerical validation using real load data on the IEEE 30-bus grid provide useful input for current and future market designs.
Daily Stress Recognition from Mobile Phone Data, Weather Conditions and Individual Traits
Bogomolov, Andrey, Lepri, Bruno, Ferron, Michela, Pianesi, Fabio, Alex, null, Pentland, null
Research has proven that stress reduces quality of life and causes many diseases. For this reason, several researchers devised stress detection systems based on physiological parameters. However, these systems require that obtrusive sensors are continuously carried by the user. In our paper, we propose an alternative approach providing evidence that daily stress can be reliably recognized based on behavioral metrics, derived from the user's mobile phone activity and from additional indicators, such as the weather conditions (data pertaining to transitory properties of the environment) and the personality traits (data concerning permanent dispositions of individuals). Our multifactorial statistical model, which is person-independent, obtains the accuracy score of 72.28% for a 2-class daily stress recognition problem. The model is efficient to implement for most of multimedia applications due to highly reduced low-dimensional feature space (32d). Moreover, we identify and discuss the indicators which have strong predictive power.