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Efficient Multi-modal Large Language Models via Progressive Consistency Distillation

Neural Information Processing Systems

Visual tokens consume substantial computational resources in multi-modal large models (MLLMs), significantly compromising their efficiency. Recent works have attempted to improve efficiency by compressing visual tokens during training, either through modifications to model components or by introducing additional parameters. However, they often overlook the increased learning difficulty caused by such compression, as the model's parameter space struggles to quickly adapt to the substantial perturbations in the feature space induced by token compression. In this work, we propose to develop Efficient MLLMs via ProgressIve Consistency Distillation (EPIC), a progressive learning framework. Specifically, by decomposing the feature space perturbations introduced by token compression along the token-wise and layer-wise dimensions, we introduce token consistency distillation and layer consistency distillation, respectively, aiming to reduce the training difficulty by leveraging guidance from a teacher model and following a progressive learning trajectory. Extensive experiments demonstrate the superior effectiveness, robustness, and generalization capabilities of our proposed framework.


Bifrost-1: Bridging Multimodal LLMs and Diffusion Models with Patch-level CLIP Latents

Neural Information Processing Systems

There is growing interest in integrating high-fidelity visual synthesis capabilities into large language models (LLMs) without compromising their strong reasoning capabilities. Existing methods that directly train LLMs or bridge LLMs and diffusion models usually suffer from costly training since the backbone LLMs have not seen image representations during pretraining. We present BIFROST-1, a unified framework that bridges pretrained multimodal LLMs (MLLMs) and diffusion models using patch-level CLIP image embeddings as latent variables, which are natively aligned with the MLLM's CLIP visual encoder. These patch-level image embeddings are integrated into the diffusion model with a lightweight adaptation of its ControlNet. To retain the original multimodal reasoning capabilities of MLLMs, we equip the MLLM with a visual generation branch initialized from the original MLLM parameters when predicting the patch-level image embeddings. By seamlessly integrating pretrained MLLMs and diffusion models with patch-level CLIP latents, our framework enables high-fidelity controllable image generation with significant training efficiency. Our experiments demonstrate that BIFROST-1 achieves comparable or better performance than previous methods in terms of visual fidelity and multimodal understanding, with substantially lower compute during training. We also provide comprehensive ablation studies showing the effectiveness of our design choices.


Unified all-atom molecule generation with neural fields

Neural Information Processing Systems

Generative models for structure-based drug design are often limited to a specific modality, restricting their broader applicability. To address this challenge, we introduce FuncBind, a framework based on computer vision to generate targetconditioned, all-atom molecules across atomic systems. FuncBind uses neural fields to represent molecules as continuous atomic densities and employs scorebased generative models with modern architectures adapted from the computer vision literature. This modality-agnostic representation allows a single unified model to be trained on diverse atomic systems, from small to large molecules, and handle variable atom/residue counts, including non-canonical amino acids. FuncBind achieves competitive in silico performance in generating small molecules, macrocyclic peptides, and antibody complementarity-determining region loops, conditioned on target structures. FuncBind also generated in vitro novel antibody binders via de novo redesign of the complementarity-determining region H3 loop of two chosen co-crystal structures. As a final contribution, we introduce a new dataset and benchmark for structure-conditioned macrocyclic peptide generation*.


Nearly-Linear Time Private Hypothesis Selection with the Optimal Approximation Factor

Neural Information Processing Systems

Estimating the density of a distribution from its samples is a fundamental problem in statistics. Hypothesis selection addresses the setting where, in addition to a sample set, we are given ncandidate distributions--referred to as hypotheses--and the goal is to determine which one best describes the underlying data distribution. This problem is known to be solvable very efficiently, requiring roughly O(logn) samples and running in O(n) time. The quality of the output is measured via the total variation distance to the unknown distribution, and the approximation factor of the algorithm determines how large this distance is compared to the optimal distance achieved by the best candidate hypothesis. It is known that ฮฑ = 3 is the optimal approximation factor for this problem. We study hypothesis selection under the constraint of differential privacy. We propose a differentially private algorithm in the central model that runs in nearly-linear time with respect to the number of hypotheses, achieves the optimal approximation factor, and incurs only a modest increase in sample complexity, which remains polylogarithmic in n. This resolves an open question posed by [Bun, Kamath, Steinke, Wu, NeurIPS 2019]. Prior to our work, existing upper bounds required quadratic time.


Towards Precision Protein-Ligand Affinity Prediction Benchmark: AComplete and Modification-Aware DAVISDataset

Neural Information Processing Systems

Advancements in AI for science unlocks capabilities for critical drug discovery tasks such as protein-ligand binding affinity prediction. However, current models overfit to existing oversimplified datasets that does not represent naturally occurring and biologically relevant proteins with modifications. In this work, we curate a complete and modification-aware version of the widely used DAVIS dataset by incorporating 4,032 kinase-ligand pairs involving substitutions, insertions, deletions, and phosphorylation events. This enriched dataset enables benchmarking of predictive models under biologically realistic conditions. Based on this new dataset, we propose three benchmark settings--Augmented Dataset Prediction, Wild-Type to Modification Generalization, and Few-Shot Modification Generalization--designed to assess model robustness in the presence of protein modifications. Through extensive evaluation of both docking-free and docking-based methods, we find that docking-based model generalize better in zero-shot settings. In contrast, docking-free models tend to overfit to wild-type proteins and struggle with unseen modifications but show notable improvement when fine-tuned on a small set of modified examples. We anticipate that the curated dataset and benchmarks offer a valuable foundation for developing models that better generalize to protein modifications, ultimately advancing precision medicine in drug discovery.


The Dual Nature of Plasticity Loss in Deep Continual Learning: Dissection and Mitigation

Neural Information Processing Systems

Loss of plasticity (LoP) is the primary cause of cognitive decline in normal aging brains next to cell loss. Recent works show that similar LoP also plagues neural networks during deep continual learning (DCL). While it has been shown that random perturbations of learned weights can alleviate LoP, its underlying mechanisms remain insufficiently understood. Here we offer a unique view of LoP and dissect its mechanisms through the lenses of an innovative framework combining the theory of neural collapse and finite-time Lyapunov exponents (FTLE) analysis. We show that LoP actually consists of two contrasting types: (i) type-1 LoP is characterized by highly negative FTLEs, where the network is prevented from learning due to the collapse of representations; (ii) while type-2 LoP is characterized by excessively positive FTLEs, where the network can train well but the growingly chaotic behaviors reduce its test accuracy. Based on these understandings, we introduce Generalized Mixup, designed to relax the representation space for prolonged DCL and demonstrate its superior efficacy vs. existing methods.


On the Robustness of Transformers against Context Hijacking for Linear Classification

Neural Information Processing Systems

Transformer-based Large Language Models (LLMs) have demonstrated powerful in-context learning capabilities. However, their predictions can be disrupted by factually correct context, a phenomenon known as context hijacking, revealing a significant robustness issue. To understand this phenomenon theoretically, we explore an in-context linear classification problem based on recent advances in linear transformers. In our setup, context tokens are designed as factually correct query-answer pairs, where the queries are similar to the final query but have opposite labels. Then, we develop a general theoretical analysis on the robustness of the linear transformers, which is formulated as a function of the model depth, training context lengths, and number of hijacking context tokens. A key finding is that a well-trained deeper transformer can achieve higher robustness, which aligns with empirical observations. We show that this improvement arises because deeper layers enable more fine-grained optimization steps, effectively mitigating interference from context hijacking. This is also well supported by our numerical and real-world experiments. Our findings provide theoretical insights into the benefits of deeper architectures and contribute to enhancing the understanding of transformer architectures.


AnomalyCoT: AMulti-Scenario Chain-of-Thought Dataset for Multimodal Large Language Models

Neural Information Processing Systems

Industrial Anomaly Detection (IAD) is an indispensable quality control technology in modern production processes. Recently, on account of the outstanding visual comprehension and cross-domain knowledge transfer capabilities of Multimodal Large Language Models (MLLMs), existing studies have explored the application of MLLMs in the IAD domain and established some multimodal IAD datasets. However, although the latest datasets contain various fundamental IAD tasks, they formulate tasks in a general question-and-answer format lacking a rigorous reasoning process, and they are relatively limited in the diversity of scenarios, which restricts their reliability in practical applications. In this paper, we propose AnomalyCoT, a multimodal Chain-of-Thought (CoT) dataset for multi-scenario IAD tasks. It consists of 37,565 IAD samples with the CoT data and is defined by challenging composite IAD tasks. Meanwhile, the CoT data for each sample provides precise coordinates of anomaly regions, thereby improving visual comprehension of defects across different types. AnomalyCoT is constructed through a systematic pipeline and involves multiple manual operations. Based on AnomalyCoT, we conducted a comprehensive evaluation of various mainstream MLLMs and fine-tuned representative models in different ways. The final results show that Gemini-2.0flash


ELDET: Early-Learning Distillation with Noisy Labels for Object Detection

Neural Information Processing Systems

The performance of learning-based object detection algorithms, which attempt to both classify and locate objects within images, is determined largely by the quality are prev of alent: the annotated objects that dataset are incorrectly used for training.


From Specificity to Generality Revisiting Artifacts in Detecting Face

Neural Information Processing Systems

Detecting deepfakes has been an increasingly important topic, especially given the rapid development of AI generation techniques. In this paper, we ask: How can we build a universal detection framework that is effective for most facial deepfakes? One significant challenge is the wide diversity of existing deepfake generators, which produced varied types of forgery artifacts (e.g., lighting inconsistency, color mismatch, etc). But should we "teach" the detector to learn all these artifacts separately? It is impossible and impractical to elaborate on them all.