Materials
MLSolv-A: A Novel Machine Learning-Based Prediction of Solvation Free Energies from Pairwise Atomistic Interactions
The importance of solvation or hydration mechanism and accompanying free energy change has made various in silico calculation methods for the solvation energy one of the most important application in computational chemistry[1-25]. The solvation free energy directly influences many chemical properties in solvated phases and plays a dominant role in various chemical reactions: drug delivery[2, 16, 18, 26], organic synthesis[27], electrochemical redox reactions[28-31], etc. The atomistic computer simulation approaches for the solvent and the solute molecules directly offer the microscopic structure of the solvation shell, which surrounds the solutes molecule[7, 8, 13, 17, 18, 32]. The solvation shell structure could provide us detailed physicochemical information like microscopic mechanisms on solvation or the interplay between the solvent and the solute molecules when we use an appropriate force field and molecular dynamics parameters. However, those explicit solvation methods we stated above need an extensive amount of numerical calculations since we have to simulate each individual molecule in the solvated system. The practical problems on the explicit solvation model restrict its applications to classical molecular mechanics simulations[7, 8, 17] or a limited number of QM/MM approaches[13, 32]. For classical mechanics approaches for macromolecules or calculations for small compounds at quantum-mechanical level, the idea of implicit solvation enables us to calculate solvation energy with feasible time and computational costs when one considers a given solvent as a continuous and isotropic medium in the Poisson-Boltzmann equation[1, 3-6, 9, 11, 15, 23, 24]. Many theoretical advances have been introduced to construct the continuum solvation model, which involves parameterized solvent properties: the polarizable continuum model (PCM)[9], the conductor-like screening model (COSMO)[1] and its variations[6, 33], generalized Born approximations like solvation model based on density (SMD)[5] or solvation model 6, 8, 12, etc. (SMx)[4, 11]. The structure-property relationship (SPR) is rather a new approach, which predicts the solvation free energy with a completely different point of view when compared to computer simulation approaches with precisely defined theoretical backgrounds[34, 35].
The Convergence of AI and Structural Engineering
Technology is supposed to have a positive effect on humanity. That was the initial vision, correct? But for some reason this artificial intelligence hype has become a controversy and the new space race all in one. On one hand, Elon Musk, CEO of Tesla, says he's taking a cautious approach to the emerging technology. Musk says it's the most serious threat to the survival of the human race [1].
Challenges in Benchmarking Stream Learning Algorithms with Real-world Data
Souza, Vinicius M. A., Reis, Denis M. dos, Maletzke, Andre G., Batista, Gustavo E. A. P. A.
Streaming data are increasingly present in real-world applications such as sensor measurements, satellite data feed, stock market, and financial data. The main characteristics of these applications are the online arrival of data observations at high speed and the susceptibility to changes in the data distributions due to the dynamic nature of real environments. The data stream mining community still faces some primary challenges and difficulties related to the comparison and evaluation of new proposals, mainly due to the lack of publicly available non-stationary real-world datasets. The comparison of stream algorithms proposed in the literature is not an easy task, as authors do not always follow the same recommendations, experimental evaluation procedures, datasets, and assumptions. In this paper, we mitigate problems related to the choice of datasets in the experimental evaluation of stream classifiers and drift detectors. To that end, we propose a new public data repository for benchmarking stream algorithms with real-world data. This repository contains the most popular datasets from literature and new datasets related to a highly relevant public health problem that involves the recognition of disease vector insects using optical sensors. The main advantage of these new datasets is the prior knowledge of their characteristics and patterns of changes to evaluate new adaptive algorithm proposals adequately. We also present an in-depth discussion about the characteristics, reasons, and issues that lead to different types of changes in data distribution, as well as a critical review of common problems concerning the current benchmark datasets available in the literature.
Guarantees for Tuning the Step Size using a Learning-to-Learn Approach
Wang, Xiang, Yuan, Shuai, Wu, Chenwei, Ge, Rong
Learning-to-learn (using optimization algorithms to learn a new optimizer) has successfully trained efficient optimizers in practice. This approach relies on meta-gradient descent on a meta-objective based on the trajectory that the optimizer generates. However, there were few theoretical guarantees on how to avoid meta-gradient explosion/vanishing problems, or how to train an optimizer with good generalization performance. In this paper, we study the learning-to-learn approach on a simple problem of tuning the step size for quadratic loss. Our results show that although there is a way to design the meta-objective so that the meta-gradient remain polynomially bounded, computing the meta-gradient directly using backpropagation leads to numerical issues that look similar to gradient explosion/vanishing problems. We also characterize when it is necessary to compute the meta-objective on a separate validation set instead of the original training set. Finally, we verify our results empirically and show that a similar phenomenon appears even for more complicated learned optimizers parametrized by neural networks.
Material Recognition for Automated Progress Monitoring using Deep Learning Methods
Ghassemi, Navid, Mahami, Hadi, Darbandi, Mohammad Tayarani, Shoeibi, Afshin, Hussain, Sadiq, Nasirzadeh, Farnad, Alizadehsani, Roohallah, Nahavandi, Darius, Khosravi, Abbas, Nahavandi, Saeid
Recent advancements in Artificial intelligence, especially deep learning, has changed many fields irreversibly by introducing state of the art methods for automation. Construction monitoring has not been an exception; as a part of construction monitoring systems, material classification and recognition have drawn the attention of deep learning and machine vision researchers. However, to create production-ready systems, there is still a long path to cover. Real-world problems such as varying illuminations and reaching acceptable accuracies need to be addressed in order to create robust systems. In this paper, we have addressed these issues and reached a state of the art performance, i.e., 97.35% accuracy rate for this task. Also, a new dataset containing 1231 images of 11 classes taken from several construction sites is gathered and publicly published to help other researchers in this field.
An analysis of timber sections and deep learning for wood species classification
The wood species classification is an essential field of investigation that can help to combat illegal logging, then providing the timber certification and allowing the application of correct timber taxing. Today, the wood classification relies on highly qualified professionals that analyze texture patterns on timber sections. However, these professionals are scarce, costly, and subject to failure. Therefore, the automation of this task using computational methods is promising. Deep learning has proven to be the ultimate technique in computer vision tasks, but it has not been much exploited to perform timber classification due to the difficulty of building large databases to train such networks. In this study, we introduced the biggest data set of wood timber microscope images to the date, with 281 species, having three types of timber sections: transverse, radial, and tangential.
The Photoswitch Dataset: A Molecular Machine Learning Benchmark for the Advancement of Synthetic Chemistry
Thawani, Aditya R., Griffiths, Ryan-Rhys, Jamasb, Arian, Bourached, Anthony, Jones, Penelope, McCorkindale, William, Aldrick, Alexander A., Lee, Alpha A.
The space of synthesizable molecules is greater than $10^{60}$, meaning only a vanishingly small fraction of these molecules have ever been realized in the lab. In order to prioritize which regions of this space to explore next, synthetic chemists need access to accurate molecular property predictions. While great advances in molecular machine learning have been made, there is a dearth of benchmarks featuring properties that are useful for the synthetic chemist. Focussing directly on the needs of the synthetic chemist, we introduce the Photoswitch Dataset, a new benchmark for molecular machine learning where improvements in model performance can be immediately observed in the throughput of promising molecules synthesized in the lab. Photoswitches are a versatile class of molecule for medical and renewable energy applications where a molecule's efficacy is governed by its electronic transition wavelengths. We demonstrate superior performance in predicting these wavelengths compared to both time-dependent density functional theory (TD-DFT), the incumbent first principles quantum mechanical approach, as well as a panel of human experts. Our baseline models are currently being deployed in the lab as part of the decision process for candidate synthesis. It is our hope that this benchmark can drive real discoveries in photoswitch chemistry and that future benchmarks can be introduced to pivot learning algorithm development to benefit more expansive areas of synthetic chemistry.
How artificial intelligence can improve resilience in mineral processing during uncertain times
As COVID-19 continues to affect millions of lives and livelihoods, it is delivering perhaps the most significant shock to industries--from education to healthcare to food supply--in almost a century. Mineral processing companies also have to grapple with profound uncertainty and volatility. Before COVID-19, some were already taking steps to build their capabilities to cope with fluctuations inherent in commodities markets. But recent events triggering challenges in workforce availability, supply chains, and demand created a need for higher levels of operational resilience in a short period of time. Here is where recent advances in artificial intelligence (AI) helped.
Boston Dynamics' robot dog inspects SpaceX site in Texas
Footage has emerged of one of Boston Dynamics' robotic dogs patrolling a SpaceX test site in the US. The video allegedly shows SpaceX using the $75,000 (ยฃ60,000) robotic dog to inspect the aftermath of its test site in Boca Chica, Texas. SpaceX had just been conducting a cryogenic pressure test on the Starship SN7 dome tank prototype, according to Tesmanian. SN7 was filled with sub-cooled liquid nitrogen and it was intentionally pressurised to its capacity before it burst and collapsed on its side. The stainless-steel commercial spacecraft, once operational, will be capable of transporting passengers on long-duration voyages to the Moon and Mars. But until the launch vehicle is ready, Elon Musk's company appears to be employing a little help from a trusty robotic companion.
AI identifies change in microstructure in aging materials
Lawrence Livermore National Laboratory (LLNL) scientists have taken a step forward in the design of future materials with improved performance by analyzing its microstructure using AI. The work recently appeared online in the journal Computational Materials Science. Technological progress in materials science applications spanning electronic, biomedical, alternate energy, electrolyte, catalyst design and beyond is often hindered by a lack of understanding of complex relationships between the underlying material microstructure and device performance. But AI-driven data analytics provide opportunities that can accelerate materials design and optimization by elucidating processing-performance correlations in a mathematically tractable way. However, to reliably train large networks one needs data from tens of thousands of samples, which, unfortunately is often prohibitive in new systems and new applications due to the cost of sample-preparation and data collection.