Fostered by novel analytical techniques, digitalization and automation, modern bioprocess development provides high amounts of heterogeneous experimental data, containing valuable process information. In this context, data-driven methods like machine learning (ML) approaches have a high potential to rationally explore large design spaces while exploiting experimental facilities most efficiently. The aim of this review is to demonstrate how ML methods have been applied so far in bioprocess development, especially in strain engineering and selection, bioprocess optimization, scale-up, monitoring and control of bioprocesses. For each topic, we will highlight successful application cases, current challenges and point out domains that can potentially benefit from technology transfer and further progress in the field of ML.

Chemical and mineral compositions of asteroids reflect the formation and history of our Solar System. This knowledge is also important for planetary defence and in-space resource utilisation. We aim to develop a fast and robust neural-network-based method for deriving the mineral modal and chemical compositions of silicate materials from their visible and near-infrared spectra. The method should be able to process raw spectra without significant pre-processing. We designed a convolutional neural network with two hidden layers for the analysis of the spectra, and trained it using labelled reflectance spectra. For the training, we used a dataset that consisted of reflectance spectra of real silicate samples stored in the RELAB and C-Tape databases, namely olivine, orthopyroxene, clinopyroxene, their mixtures, and olivine-pyroxene-rich meteorites. We used the model on two datasets. First, we evaluated the model reliability on a test dataset where we compared the model classification with known compositional reference values. The individual classification results are mostly within 10 percentage-point intervals around the correct values. Second, we classified the reflectance spectra of S-complex (Q-type and V-type, also including A-type) asteroids with known Bus-DeMeo taxonomy classes. The predicted mineral chemical composition of S-type and Q-type asteroids agree with the chemical composition of ordinary chondrites. The modal abundances of V-type and A-type asteroids show a dominant contribution of orthopyroxene and olivine, respectively. Additionally, our predictions of the mineral modal composition of S-type and Q-type asteroids show an apparent depletion of olivine related to the attenuation of its diagnostic absorptions with space weathering. This trend is consistent with previous results of the slower pyroxene response to space weathering relative to olivine.

We address the problem of generating a sequence of LEGO brick assembly with high-fidelity structures, satisfying physical constraints between bricks. The assembly problem is challenging since the number of possible structures increases exponentially with the number of available bricks, complicating the physical constraints to satisfy across bricks. To tackle this problem, our method performs a brick structure assessment to predict the next brick position and its confidence by employing a U-shaped sparse 3D convolutional network. The convolution filter efficiently validates physical constraints in a parallelizable and scalable manner, allowing to process of different brick types. To generate a novel structure, we devise a sampling strategy to determine the next brick position by considering attachable positions under physical constraints. Instead of using handcrafted brick assembly datasets, our model is trained with a large number of 3D objects that allow to create a new high-fidelity structure. We demonstrate that our method successfully generates diverse brick structures while handling two different brick types and outperforms existing methods based on Bayesian optimization, graph generative model, and reinforcement learning, all of which are limited to a single brick type.

Monitoring of industrial processes is a critical capability in industry and in government to ensure reliability of production cycles, quick emergency response, and national security. Process monitoring allows users to gauge the involvement of an organization in an industrial process or predict the degradation or aging of machine parts in processes taking place at a remote location. Similar to many data science applications, we usually only have access to limited raw data, such as satellite imagery, short video clips, some event logs, and signatures captured by a small set of sensors. To combat data scarcity, we leverage the knowledge of subject matter experts (SMEs) who are familiar with the process. Various process mining techniques have been developed for this type of analysis; typically such approaches combine theoretical process models built based on domain expert insights with ad-hoc integration of available pieces of raw data. Here, we introduce a novel mathematically sound method that integrates theoretical process models (as proposed by SMEs) with interrelated minimal Hidden Markov Models (HMM), built via non-negative tensor factorization and discrete model simulations. Our method consolidates: (a) Theoretical process models development, (b) Discrete model simulations (c) HMM, (d) Joint Non-negative Matrix Factorization (NMF) and Non-negative Tensor Factorization (NTF), and (e) Custom model selection. To demonstrate our methodology and its abilities, we apply it on simple synthetic and real world process models.

The discovery of new catalysts is one of the significant topics of computational chemistry as it has the potential to accelerate the adoption of renewable energy sources. Recently developed deep learning approaches such as graph neural networks (GNNs) open new opportunity to significantly extend scope for modelling novel high-performance catalysts. Nevertheless, the graph representation of particular crystal structure is not a straightforward task due to the ambiguous connectivity schemes and numerous embeddings of nodes and edges. Here we present embedding improvement for GNN that has been modified by Voronoi tesselation and is able to predict the energy of catalytic systems within Open Catalyst Project dataset. Enrichment of the graph was calculated via Voronoi tessellation and the corresponding contact solid angles and types (direct or indirect) were considered as features of edges and Voronoi volumes were used as node characteristics. The auxiliary approach was enriching node representation by intrinsic atomic properties (electronegativity, period and group position). Proposed modifications allowed us to improve the mean absolute error of the original model and the final error equals to 651 meV per atom on the Open Catalyst Project dataset and 6 meV per atom on the intermetallics dataset. Also, by consideration of additional dataset, we show that a sensible choice of data can decrease the error to values above physically-based 20 meV per atom threshold.

What's happened: Meta has unveiled an AI system that generates short videos based on text prompts. Make-A-Video lets you type in a string of words, like "A dog wearing a superhero outfit with a red cape flying through the sky," and then generates a five-second clip that, while pretty accurate, has the aesthetics of a trippy old home video. How it works: Meta combined data from three open-source image and video data sets to train its model. Standard text-image data sets of labeled still images helped the AI learn what objects are called and what they look like. And a database of videos helped it learn how those objects are supposed to move in the world. Why it matters: Although the effect is rather crude, the system offers an early glimpse of what's coming next for generative artificial intelligence, and it is the next obvious step from the text-to-image AI systems that have caused huge excitement this year.

Powered by acoustics, existing therapeutic and diagnostic procedures will become less invasive and new methods will become available that have never been available before. Acoustically driven microrobot navigation based on microbubbles is a promising approach for targeted drug delivery. Previous studies have used acoustic techniques to manipulate microbubbles in vitro and in vivo for the delivery of drugs using minimally invasive procedures. Even though many advanced capabilities and sophisticated control have been achieved for acoustically powered microrobots, there remain many challenges that remain to be solved. In order to develop the next generation of intelligent micro/nanorobots, it is highly desirable to conduct accurate identification of the micro-nanorobots and to control their dynamic motion autonomously. Here we use reinforcement learning control strategies to learn the microrobot dynamics and manipulate them through acoustic forces. The result demonstrated for the first time autonomous acoustic navigation of microbubbles in a microfluidic environment. Taking advantage of the benefit of the second radiation force, microbubbles swarm to form a large swarm, which is then driven along the desired trajectory. More than 100 thousand images were used for the training to study the unexpected dynamics of microbubbles. As a result of this work, the microrobots are validated to be controlled, illustrating a good level of robustness and providing computational intelligence to the microrobots, which enables them to navigate independently in an unstructured environment without requiring outside assistance.

Industry 4.0 targets the conversion of the traditional industries into intelligent ones through technological revolution. This revolution is only possible through innovation, optimization, interconnection, and rapid decision-making capability. Numerical models are believed to be the key components of Industry 4.0, facilitating quick decision-making through simulations instead of costly experiments. However, numerical investigation of precise, high-fidelity models for optimization or decision-making is usually time-consuming and computationally expensive. In such instances, data-driven surrogate models are excellent substitutes for fast computational analysis and the probabilistic prediction of the output parameter for new input parameters. The emergence of Internet of Things (IoT) and Machine Learning (ML) has made the concept of surrogate modeling even more viable. However, these surrogate models contain intrinsic uncertainties, originate from modeling defects, or both. These uncertainties, if not quantified and minimized, can produce a skewed result. Therefore, proper implementation of uncertainty quantification techniques is crucial during optimization, cost reduction, or safety enhancement processes analysis. This chapter begins with a brief overview of the concept of surrogate modeling, transfer learning, IoT and digital twins. After that, a detailed overview of uncertainties, uncertainty quantification frameworks, and specifics of uncertainty quantification methodologies for a surrogate model linked to a digital twin is presented. Finally, the use of uncertainty quantification approaches in the nuclear industry has been addressed.

Recent years have seen the advent of molecular simulation datasets that are orders of magnitude larger and more diverse. These new datasets differ substantially in four aspects of complexity: 1. Chemical diversity (number of different elements), 2. system size (number of atoms per sample), 3. dataset size (number of data samples), and 4. domain shift (similarity of the training and test set). Despite these large differences, benchmarks on small and narrow datasets remain the predominant method of demonstrating progress in graph neural networks (GNNs) for molecular simulation, likely due to cheaper training compute requirements. This raises the question -- does GNN progress on small and narrow datasets translate to these more complex datasets? This work investigates this question by first developing the GemNet-OC model based on the large Open Catalyst 2020 (OC20) dataset. GemNet-OC outperforms the previous state-of-the-art on OC20 by 16% while reducing training time by a factor of 10. We then compare the impact of 18 model components and hyperparameter choices on performance in multiple datasets. We find that the resulting model would be drastically different depending on the dataset used for making model choices. To isolate the source of this discrepancy we study six subsets of the OC20 dataset that individually test each of the above-mentioned four dataset aspects. We find that results on the OC-2M subset correlate well with the full OC20 dataset while being substantially cheaper to train on. Our findings challenge the common practice of developing GNNs solely on small datasets, but highlight ways of achieving fast development cycles and generalizable results via moderately-sized, representative datasets such as OC-2M and efficient models such as GemNet-OC. Our code and pretrained model weights are open-sourced.

Laboratory of Computational Science and Modeling, IMX, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland (Dated: September 30, 2022) Machine-learning potentials are usually trained on the ground-state, Born-Oppenheimer energy surface, which depends exclusively on the atomic positions and not on the simulation temperature. This disregards the effect of thermally-excited electrons, that is important in metals, and essential to the description of warm dense matter. An accurate physical description of these effects requires that the nuclei move on a temperature-dependent electronic free energy. We propose a method to obtain machine-learning predictions of this free energy at an arbitrary electron temperature using exclusively training data from ground-state calculations, avoiding the need to train temperaturedependent potentials, and benchmark it on metallic liquid hydrogen at the conditions of the core of gas giants and brown dwarfs. This work demonstrates the advantages of hybrid schemes that use physical consideration to combine machine-learning predictions, providing a blueprint for the development of similar approaches that extend the reach of atomistic modelling by removing the barrier between physics and data-driven methodologies.