The discovery of novel inhibitor molecules for emerging drug-target proteins is widely acknowledged as a challenging inverse design problem: Exhaustive exploration of the vast chemical search space is impractical, especially when the target structure or active molecules are unknown. Here we validate experimentally the broad utility of a deep generative framework trained at-scale on protein sequences, small molecules, and their mutual interactions -- that is unbiased toward any specific target. As demonstrators, we consider two dissimilar and relevant SARS-CoV-2 targets: the main protease and the spike protein (receptor binding domain, RBD). To perform target-aware design of novel inhibitor molecules, a protein sequence-conditioned sampling on the generative foundation model is performed. Despite using only the target sequence information, and without performing any target-specific adaptation of the generative model, micromolar-level inhibition was observed in in vitro experiments for two candidates out of only four synthesized for each target. The most potent spike RBD inhibitor also exhibited activity against several variants in live virus neutralization assays. These results therefore establish that a single, broadly deployable generative foundation model for accelerated hit discovery is effective and efficient, even in the most general case where neither target structure nor binder information is available.

Built through the acquisition of 17 companies over approximately a 4-year timespan, the company has seen continued solid organic growth from their customers in their target markets of healthcare and consumer packaged goods and continues on their new customer acquisition journey. Westfall's corporate methodologies backed by their "Stacked Integration Model" certainly delivers as it relates to their value proposition but also has magnified the need for continuous improvement in key areas given its growth. This has resulted in a corporate structure which poses unique and nuanced supply chain challenges. The company provides end-to-end manufacturing capabilities, including product design, moldmaking, injection molding, assembly and more to a broad range of customers, and as David Schultz, VP, Chief Supply Chain Executive puts it, Westfall Technik counts "all the biggest logos" amongst its customers. Schultz, whose past experience includes several senior operating positions, more specifically, Chief Procurement Officer/Chief Supply Chain Officer for both private and publicly traded companies.

Hierarchical reinforcement learning (HRL) effectively improves agents' exploration efficiency on tasks with sparse reward, with the guide of high-quality hierarchical structures (e.g., subgoals or options). However, how to automatically discover high-quality hierarchical structures is still a great challenge. Previous HRL methods can hardly discover the hierarchical structures in complex environments due to the low exploration efficiency by exploiting the randomness-driven exploration paradigm. To address this issue, we propose CDHRL, a causality-driven hierarchical reinforcement learning framework, leveraging a causality-driven discovery instead of a randomness-driven exploration to effectively build high-quality hierarchical structures in complicated environments. The key insight is that the causalities among environment variables are naturally fit for modeling reachable subgoals and their dependencies and can perfectly guide to build high-quality hierarchical structures. The results in two complex environments, 2D-Minecraft and Eden, show that CDHRL significantly boosts exploration efficiency with the causality-driven paradigm.

Modeling the energy and forces of atomic systems is a fundamental problem in computational chemistry with the potential to help address many of the world's most pressing problems, including those related to energy scarcity and climate change. These calculations are traditionally performed using Density Functional Theory, which is computationally very expensive. Machine learning has the potential to dramatically improve the efficiency of these calculations from days or hours to seconds. We propose the Spherical Channel Network (SCN) to model atomic energies and forces. The SCN is a graph neural network where nodes represent atoms and edges their neighboring atoms. The atom embeddings are a set of spherical functions, called spherical channels, represented using spherical harmonics. We demonstrate, that by rotating the embeddings based on the 3D edge orientation, more information may be utilized while maintaining the rotational equivariance of the messages. While equivariance is a desirable property, we find that by relaxing this constraint in both message passing and aggregation, improved accuracy may be achieved. We demonstrate state-of-the-art results on the large-scale Open Catalyst 2020 dataset in both energy and force prediction for numerous tasks and metrics.

Deep learning models are gaining popularity and potency in predicting polymer properties. These models can be built using pre-existing data and are useful for the rapid prediction of polymer properties. However, the performance of a deep learning model is intricately connected to its topology and the volume of training data. There is no facile protocol available to select a deep learning architecture, and there is a lack of a large volume of homogeneous sequence-property data of polymers. These two factors are the primary bottleneck for the efficient development of deep learning models. Here we assess the severity of these factors and propose new algorithms to address them. We show that a linear layer-by-layer expansion of a neural network can help in identifying the best neural network topology for a given problem. Moreover, we map the discrete sequence space of a polymer to a continuous one-dimensional latent space using a machine learning pipeline to identify minimal data points for building a universal deep learning model. We implement these approaches for three representative cases of building sequence-property surrogate models, viz., the single-molecule radius of gyration of a copolymer, adhesive free energy of a copolymer, and copolymer compatibilizer, demonstrating the generality of the proposed strategies. This work establishes efficient methods for building universal deep learning models with minimal data and hyperparameters for predicting sequence-defined properties of polymers.

We pose that microscopy offers an ideal real-world experimental environment for the development and deployment of active Bayesian and reinforcement learning methods. Indeed, the tremendous progress achieved by machine learning (ML) and artificial intelligence over the last decade has been largely achieved via the utilization of static data sets, from the paradigmatic MNIST to the bespoke corpora of text and image data used to train large models such as GPT3, DALLE and others. However, it is now recognized that continuous, minute improvements to state-of-the-art do not necessarily translate to advances in real-world applications. We argue that a promising pathway for the development of ML methods is via the route of domain-specific deployable algorithms in areas such as electron and scanning probe microscopy and chemical imaging. This will benefit both fundamental physical studies and serve as a test bed for more complex autonomous systems such as robotics and manufacturing. Favorable environment characteristics of scanning and electron microscopy include low risk, extensive availability of domain-specific priors and rewards, relatively small effects of exogeneous variables, and often the presence of both upstream first principles as well as downstream learnable physical models for both statics and dynamics. Recent developments in programmable interfaces, edge computing, and access to APIs facilitating microscope control, all render the deployment of ML codes on operational microscopes straightforward. We discuss these considerations and hope that these arguments will lead to creating a novel set of development targets for the ML community by accelerating both real-world ML applications and scientific progress.

Disentangling the encodings of neural models is a fundamental aspect for improving interpretability, semantic control, and understanding downstream task performance in Natural Language Processing. The connection points between disentanglement and downstream tasks, however, remains underexplored from a explanatory standpoint. This work presents a methodology for assessment of geometrical properties of the resulting latent space w.r.t. vector operations and semantic disentanglement in quantitative and qualitative terms, based on a VAE-based supervised framework. Empirical results indicate that the role-contents of explanations, such as \textit{ARG0-animal}, are disentangled in the latent space, which provides us a chance for controlling the explanation generation by manipulating the traversal of vector over latent space.

We describe an augmented intelligence system for simplifying and enhancing the modeling experience for operations research. Using this system, the user receives a suggested formulation of an optimization problem based on its description. To facilitate this process, we build an intuitive user interface system that enables the users to validate and edit the suggestions. We investigate controlled generation techniques to obtain an automatic suggestion of formulation. Then, we evaluate their effectiveness with a newly created dataset of linear programming problems drawn from various application domains.

Finding accurate solutions to the Schr\"odinger equation is the key unsolved challenge of computational chemistry. Given its importance for the development of new chemical compounds, decades of research have been dedicated to this problem, but due to the large dimensionality even the best available methods do not yet reach the desired accuracy. Recently the combination of deep learning with Monte Carlo methods has emerged as a promising way to obtain highly accurate energies and moderate scaling of computational cost. In this paper we significantly contribute towards this goal by introducing a novel deep-learning architecture that achieves 40-70% lower energy error at 6x lower computational cost compared to previous approaches. Using our method we establish a new benchmark by calculating the most accurate variational ground state energies ever published for a number of different atoms and molecules. We systematically break down and measure our improvements, focusing in particular on the effect of increasing physical prior knowledge. We surprisingly find that increasing the prior knowledge given to the architecture can actually decrease accuracy.

Identification of best performing fertilizer practices among a set of contrasting practices with field trials is challenging as crop losses are costly for farmers. To identify best management practices, an ''intuitive strategy'' would be to set multi-year field trials with equal proportion of each practice to test. Our objective was to provide an identification strategy using a bandit algorithm that was better at minimizing farmers' losses occurring during the identification, compared with the ''intuitive strategy''. We used a modification of the Decision Support Systems for Agro-Technological Transfer (DSSAT) crop model to mimic field trial responses, with a case-study in Southern Mali. We compared fertilizer practices using a risk-aware measure, the Conditional Value-at-Risk (CVaR), and a novel agronomic metric, the Yield Excess (YE). YE accounts for both grain yield and agronomic nitrogen use efficiency. The bandit-algorithm performed better than the intuitive strategy: it increased, in most cases, farmers' protection against worst outcomes. This study is a methodological step which opens up new horizons for risk-aware ensemble identification of the performance of contrasting crop management practices in real conditions.