Materials
Chain of Attack: a Semantic-Driven Contextual Multi-Turn attacker for LLM
Yang, Xikang, Tang, Xuehai, Hu, Songlin, Han, Jizhong
Large language models (LLMs) have achieved remarkable performance in various natural language processing tasks, especially in dialogue systems. However, LLM may also pose security and moral threats, especially in multi round conversations where large models are more easily guided by contextual content, resulting in harmful or biased responses. In this paper, we present a novel method to attack LLMs in multi-turn dialogues, called CoA (Chain of Attack). CoA is a semantic-driven contextual multi-turn attack method that adaptively adjusts the attack policy through contextual feedback and semantic relevance during multi-turn of dialogue with a large model, resulting in the model producing unreasonable or harmful content. We evaluate CoA on different LLMs and datasets, and show that it can effectively expose the vulnerabilities of LLMs, and outperform existing attack methods. Our work provides a new perspective and tool for attacking and defending LLMs, and contributes to the security and ethical assessment of dialogue systems.
A Review on Fragment-based De Novo 2D Molecule Generation
In the field of computational molecule generation, an essential task in the discovery of new chemical compounds, fragment-based deep generative models are a leading approach, consistently achieving state-of-the-art results in molecular design benchmarks as of 2023. We present a detailed comparative assessment of their architectures, highlighting their unique approaches to molecular fragmentation and generative modeling. This review also includes comparisons of output quality, generation speed, and the current limitations of specific models. We also highlight promising avenues for future research that could bridge fragment-based models to real-world applications.
Data-Error Scaling in Machine Learning on Natural Discrete Combinatorial Mutation-prone Sets: Case Studies on Peptides and Small Molecules
Doffini, Vanni, von Lilienfeld, O. Anatole, Nash, Michael A.
We investigate trends in the data-error scaling behavior of machine learning (ML) models trained on discrete combinatorial spaces that are prone-to-mutation, such as proteins or organic small molecules. We trained and evaluated kernel ridge regression machines using variable amounts of computationally generated training data. Our synthetic datasets comprise i) two na\"ive functions based on many-body theory; ii) binding energy estimates between a protein and a mutagenised peptide; and iii) solvation energies of two 6-heavy atom structural graphs. In contrast to typical data-error scaling, our results showed discontinuous monotonic phase transitions during learning, observed as rapid drops in the test error at particular thresholds of training data. We observed two learning regimes, which we call saturated and asymptotic decay, and found that they are conditioned by the level of complexity (i.e. number of mutations) enclosed in the training set. We show that during training on this class of problems, the predictions were clustered by the ML models employed in the calibration plots. Furthermore, we present an alternative strategy to normalize learning curves (LCs) and the concept of mutant based shuffling. This work has implications for machine learning on mutagenisable discrete spaces such as chemical properties or protein phenotype prediction, and improves basic understanding of concepts in statistical learning theory.
ChatSOS: Vector Database Augmented Generative Question Answering Assistant in Safety Engineering
Tang, Haiyang, Chen, Dongping, Chu, Qingzhao
With the rapid advancement of natural language processing technologies, generative artificial intelligence techniques, represented by large language models (LLMs), are gaining increasing prominence and demonstrating significant potential for applications in safety engineering. However, fundamental LLMs face constraints such as limited training data coverage and unreliable responses. This study develops a vector database from 117 explosion accident reports in China spanning 2013 to 2023, employing techniques such as corpus segmenting and vector embedding. By utilizing the vector database, which outperforms the relational database in information retrieval quality, we provide LLMs with richer, more relevant knowledge. Comparative analysis of LLMs demonstrates that ChatSOS significantly enhances reliability, accuracy, and comprehensiveness, improves adaptability and clarification of responses. These results illustrate the effectiveness of supplementing LLMs with an external database, highlighting their potential to handle professional queries in safety engineering and laying a foundation for broader applications.
ATDM:An Anthropomorphic Aerial Tendon-driven Manipulator with Low-Inertia and High-Stiffness
Xu, Quman, Li, Zhan, Li, Hai, Yu, Xinghu, Yang, Yipeng
Aerial Manipulator Systems (AMS) have garnered significant interest for their utility in aerial operations. Nonetheless, challenges related to the manipulator's limited stiffness and the coupling disturbance with manipulator movement persist. This paper introduces the Aerial Tendon-Driven Manipulator (ATDM), an innovative AMS that integrates a hexrotor Unmanned Aerial Vehicle (UAV) with a 4-degree-of-freedom (4-DOF) anthropomorphic tendon-driven manipulator. The design of the manipulator is anatomically inspired, emulating the human arm anatomy from the shoulder joint downward. To enhance the structural integrity and performance, finite element topology optimization and lattice optimization are employed on the links to replicate the radially graded structure characteristic of bone, this approach effectively reduces weight and inertia while simultaneously maximizing stiffness. A novel tensioning mechanism with adjustable tension is introduced to address cable relaxation, and a Tension-amplification tendon mechanism is implemented to increase the manipulator's overall stiffness and output. The paper presents a kinematic model based on virtual coupled joints, a comprehensive workspace analysis, and detailed calculations of output torques and stiffness for individual arm joints. The prototype arm has a total weight of 2.7 kg, with the end effector contributing only 0.818 kg. By positioning all actuators at the base, coupling disturbance are minimized. The paper includes a detailed mechanical design and validates the system's performance through semi-physical multi-body dynamics simulations, confirming the efficacy of the proposed design.
Molecular Identification via Molecular Fingerprint extraction from Atomic Force Microscopy images
Lastre, Manuel Gonzรกlez, Pou, Pablo, Wiche, Miguel, Ebeling, Daniel, Schirmeisen, Andre, Pรฉrez, Rubรฉn
Non--Contact Atomic Force Microscopy with CO--functionalized metal tips (referred to as HR-AFM) provides access to the internal structure of individual molecules adsorbed on a surface with totally unprecedented resolution. Previous works have shown that deep learning (DL) models can retrieve the chemical and structural information encoded in a 3D stack of constant-height HR--AFM images, leading to molecular identification. In this work, we overcome their limitations by using a well-established description of the molecular structure in terms of topological fingerprints, the 1024--bit Extended Connectivity Chemical Fingerprints of radius 2 (ECFP4), that were developed for substructure and similarity searching. ECFPs provide local structural information of the molecule, each bit correlating with a particular substructure within the molecule. Our DL model is able to extract this optimized structural descriptor from the 3D HR--AFM stacks and use it, through virtual screening, to identify molecules from their predicted ECFP4 with a retrieval accuracy on theoretical images of 95.4\%. Furthermore, this approach, unlike previous DL models, assigns a confidence score, the Tanimoto similarity, to each of the candidate molecules, thus providing information on the reliability of the identification. By construction, the number of times a certain substructure is present in the molecule is lost during the hashing process, necessary to make them useful for machine learning applications. We show that it is possible to complement the fingerprint-based virtual screening with global information provided by another DL model that predicts from the same HR--AFM stacks the chemical formula, boosting the identification accuracy up to a 97.6\%. Finally, we perform a limited test with experimental images, obtaining promising results towards the application of this pipeline under real conditions
Integrating knowledge-guided symbolic regression and model-based design of experiments to automate process flow diagram development
Rogers, Alexander W., Lane, Amanda, Mendoza, Cesar, Watson, Simon, Kowalski, Adam, Martin, Philip, Zhang, Dongda
New products must be formulated rapidly to succeed in the global formulated product market; however, key product indicators (KPIs) can be complex, poorly understood functions of the chemical composition and processing history. Consequently, scale-up must currently undergo expensive trial-and-error campaigns. To accelerate process flow diagram (PFD) optimisation and knowledge discovery, this work proposed a novel digital framework to automatically quantify process mechanisms by integrating symbolic regression (SR) within model-based design of experiments (MBDoE). Each iteration, SR proposed a Pareto front of interpretable mechanistic expressions, and then MBDoE designed a new experiment to discriminate between them while balancing PFD optimisation. To investigate the framework's performance, a new process model capable of simulating general formulated product synthesis was constructed to generate in-silico data for different case studies. The framework could effectively discover ground-truth process mechanisms within a few iterations, indicating its great potential for use within the general chemical industry for digital manufacturing and product innovation.
A New Dataset and Comparative Study for Aphid Cluster Detection and Segmentation in Sorghum Fields
Rahman, Raiyan, Indris, Christopher, Bramesfeld, Goetz, Zhang, Tianxiao, Li, Kaidong, Chen, Xiangyu, Grijalva, Ivan, McCornack, Brian, Flippo, Daniel, Sharda, Ajay, Wang, Guanghui
Aphid infestations are one of the primary causes of extensive damage to wheat and sorghum fields and are one of the most common vectors for plant viruses, resulting in significant agricultural yield losses. To address this problem, farmers often employ the inefficient use of harmful chemical pesticides that have negative health and environmental impacts. As a result, a large amount of pesticide is wasted on areas without significant pest infestation. This brings to attention the urgent need for an intelligent autonomous system that can locate and spray sufficiently large infestations selectively within the complex crop canopies. We have developed a large multi-scale dataset for aphid cluster detection and segmentation, collected from actual sorghum fields and meticulously annotated to include clusters of aphids. Our dataset comprises a total of 54,742 image patches, showcasing a variety of viewpoints, diverse lighting conditions, and multiple scales, highlighting its effectiveness for real-world applications. In this study, we trained and evaluated four real-time semantic segmentation models and three object detection models specifically for aphid cluster segmentation and detection. Considering the balance between accuracy and efficiency, Fast-SCNN delivered the most effective segmentation results, achieving 80.46% mean precision, 81.21% mean recall, and 91.66 frames per second (FPS). For object detection, RT-DETR exhibited the best overall performance with a 61.63% mean average precision (mAP), 92.6% mean recall, and 72.55 on an NVIDIA V100 GPU. Our experiments further indicate that aphid cluster segmentation is more suitable for assessing aphid infestations than using detection models.
A review on data-driven constitutive laws for solids
Fuhg, Jan Niklas, Padmanabha, Govinda Anantha, Bouklas, Nikolaos, Bahmani, Bahador, Sun, WaiChing, Vlassis, Nikolaos N., Flaschel, Moritz, Carrara, Pietro, De Lorenzis, Laura
This review article highlights state-of-the-art data-driven techniques to discover, encode, surrogate, or emulate constitutive laws that describe the path-independent and path-dependent response of solids. Our objective is to provide an organized taxonomy to a large spectrum of methodologies developed in the past decades and to discuss the benefits and drawbacks of the various techniques for interpreting and forecasting mechanics behavior across different scales. Distinguishing between machine-learning-based and model-free methods, we further categorize approaches based on their interpretability and on their learning process/type of required data, while discussing the key problems of generalization and trustworthiness. We attempt to provide a road map of how these can be reconciled in a data-availability-aware context. We also touch upon relevant aspects such as data sampling techniques, design of experiments, verification, and validation.
AdsorbDiff: Adsorbate Placement via Conditional Denoising Diffusion
Kolluru, Adeesh, Kitchin, John R
Determining the optimal configuration of adsorbates on a slab (adslab) is pivotal in the exploration of novel catalysts across diverse applications. Traditionally, the quest for the lowest energy adslab configuration involves placing the adsorbate onto the slab followed by an optimization process. Prior methodologies have relied on heuristics, problem-specific intuitions, or brute-force approaches to guide adsorbate placement. In this work, we propose a novel framework for adsorbate placement using denoising diffusion. The model is designed to predict the optimal adsorbate site and orientation corresponding to the lowest energy configuration. Further, we have an end-to-end evaluation framework where diffusion-predicted adslab configuration is optimized with a pretrained machine learning force field and finally evaluated with Density Functional Theory (DFT). Our findings demonstrate an acceleration of up to 5x or 3.5x improvement in accuracy compared to the previous best approach. Given the novelty of this framework and application, we provide insights into the impact of pre-training, model architectures, and conduct extensive experiments to underscore the significance of this approach.