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Predicting Mycotoxin Contamination in Irish Oats Using Deep and Transfer Learning

arXiv.org Machine Learning

Mycotoxin contamination poses a significant risk to cereal crop quality, food safety, and agricultural productivity. Accurate prediction of mycotoxin levels can support early intervention strategies and reduce economic losses. This study investigates the use of neural networks and transfer learning models to predict mycotoxin contamination in Irish oat crops as a multi-response prediction task. Our dataset comprises oat samples collected in Ireland, containing a mix of environmental, agronomic, and geographical predictors. Five modelling approaches were evaluated: a baseline multilayer perceptron (MLP), an MLP with pre-training, and three transfer learning models; TabPFN, TabNet, and FT-Transformer. Model performance was evaluated using regression (RMSE, $R^2$) and classification (AUC, F1) metrics, with results reported per toxin and on average. Additionally, permutation-based variable importance analysis was conducted to identify the most influential predictors across both prediction tasks. The transfer learning approach TabPFN provided the overall best performance, followed by the baseline MLP. Our variable importance analysis revealed that weather history patterns in the 90-day pre-harvest period were the most important predictors, alongside seed moisture content.


Stop using so much sidewalk salt

Popular Science

Winter needs a low-sodium diet. Breakthroughs, discoveries, and DIY tips sent every weekday. Every winter across most of the northern US, giant bags of salt materialize at grocery stores and home improvement retailers as residents and business owners prepare to combat icy sidewalks and slick driveways. But when it comes to salting walkways and parking lots, most people overdo it, which costs more than just cash; using too much salt can have surprisingly harmful effects on the local environment, water quality, and human health. When salt is applied to roads and sidewalks as a deicing agent, as snow melts, salt gets washed into streams, lakes, and wetlands.


Towards Combinatorial Generalization for Catalysts: A Kohn-Sham Charge-Density Approach

Neural Information Processing Systems

The Kohn-Sham equations underlie many important applications such as the discovery of new catalysts. Recent machine learning work on catalyst modeling has focused on prediction of the energy, but has so far not yet demonstrated significant out-of-distribution generalization. Here we investigate another approach based on the pointwise learning of the Kohn-Sham charge-density. On a new dataset of bulk catalysts with charge densities, we show density models can generalize to new structures with combinations of elements not seen at train time, a form of combinatorial generalization. We show that over 80% of binary and ternary test cases achieve faster convergence than standard baselines in Density Functional Theory, amounting to an average reduction of 13% in the number of iterations required to reach convergence, which may be of independent interest. Our results suggest that density learning is a viable alternative, trading greater inference costs for a step towards combinatorial generalization, a key property for applications.


Depth-First Proof-Number Search with Heuristic Edge Cost and Application to Chemical Synthesis Planning

Neural Information Processing Systems

Search techniques, such as Monte Carlo Tree Search (MCTS) and Proof-Number Search (PNS), are effective in playing and solving games. However, the understanding of their performance in industrial applications is still limited. We investigate MCTS and Depth-First Proof-Number (DFPN) Search, a PNS variant, in the domain of Retrosynthetic Analysis (RA). We find that DFPN's strengths, that justify its success in games, have limited value in RA, and that an enhanced MCTS variant by Segler et al. significantly outperforms DFPN. We address this disadvantage of DFPN in RA with a novel approach to combine DFPN with Heuristic Edge Initialization. Our new search algorithm DFPN-E outperforms the enhanced MCTS in search time by a factor of 3 on average, with comparable success rates.


MeshSDF: Differentiable Iso-Surface Extraction

Neural Information Processing Systems

Geometric Deep Learning has recently made striking progress with the advent of continuous Deep Implicit Fields. They allow for detailed modeling of watertight surfaces of arbitrary topology while not relying on a 3D Euclidean grid, resulting in a learnable parameterization that is not limited in resolution. Unfortunately, these methods are often not suitable for applications that require an explicit mesh-based surface representation because converting an implicit field to such a representation relies on the Marching Cubes algorithm, which cannot be differentiated with respect to the underlying implicit field. In this work, we remove this limitation and introduce a differentiable way to produce explicit surface mesh representations from Deep Signed Distance Functions. Our key insight is that by reasoning on how implicit field perturbations impact local surface geometry, one can ultimately differentiate the 3D location of surface samples with respect to the underlying deep implicit field. We exploit this to define MeshSDF, an end-to-end differentiable mesh representation which can vary its topology. We use two different applications to validate our theoretical insight: Single-View Reconstruction via Differentiable Rendering and Physically-Driven Shape Optimization. In both cases our differentiable parameterization gives us an edge over state-of-the-art algorithms.


Open High-Resolution Satellite Imagery: The WorldStrat Dataset โ€“ With Application to Super-Resolution

Neural Information Processing Systems

Analyzing the planet at scale with satellite imagery and machine learning is a dream that has been constantly hindered by the cost of difficult-to-access highly-representative high-resolution imagery. To remediate this, we introduce here the WorldStratified dataset. The largest and most varied such publicly available dataset, at Airbus SPOT 6/7 satellites' high resolution of up to 1.5 m/pixel, empowered by European Space Agency's Phi-Lab as part of the ESA-funded QueryPlanet project, we curate 10,000 sq km of unique locations to ensure stratified representation of all types of land-use across the world: from agriculture to ice caps, from forests to multiple urbanization densities. We also enrich those with locations typically under-represented in ML datasets: sites of humanitarian interest, illegal mining sites, and settlements of persons at risk.


Hit and Lead Discovery with Explorative RL and Fragment-based Molecule Generation

Neural Information Processing Systems

Recently, utilizing reinforcement learning (RL) to generate molecules with desired properties has been highlighted as a promising strategy for drug design. Molecular docking program -- a physical simulation that estimates protein-small molecule binding affinity -- can be an ideal reward scoring function for RL, as it is a straightforward proxy of the therapeutic potential. Still, two imminent challenges exist for this task. First, the models often fail to generate chemically realistic and pharmacochemically acceptable molecules. Second, the docking score optimization is a difficult exploration problem that involves many local optima and less smooth surface with respect to molecular structure.



HelloFresh Meal Kit's Discount Code for December 2025 Unlocks a Free Zwilling Knife

WIRED

One of WIRED's Favorite Chef Knives Is Free With a HelloFresh Membership The 8-inch Zwilling Four Star chef's knife is an excellent carbon steel blade that retails around $100. It's free with some food. I don't know if a good knife is hard to find. But they usually cost at least a hundred dollars, so it's worth noting when HelloFresh is offering one of WIRED's favorite chef's knives for the low, low price of free. This is the time of year when a lot of the best meal kit deals start to happen. And so if you hang around for three weeks of meal delivery service from HelloFresh, your third box will include delivery of a Zwilling Four Star 8-inch chef knife, a $100-plus carbon steel blade that WIRED reviewer Molly Higgins lists as her runner-up favorite blade overall--and her favorite carbon-steel for most people.


'Living rocks' suck up a lot of carbon

Popular Science

Super tough microbialites are some of the oldest evidence of life on Earth. Breakthroughs, discoveries, and DIY tips sent every weekday. Among the tricky carnivorous plants, great white shark-killing orca whales, and other remarkable flora and fauna that call South Africa home is a remarkable group of "living rocks." Called microbialites, these communities are similar to coral reefs and are built up by microbes. These tiny living organisms absorb and release dissolved minerals into more solid rock-like forms.