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Bayesian Latent Space Models for Graphs Are Misspecified: Toward Robust Inference via Generalized Posteriors

arXiv.org Machine Learning

Bayesian latent space models offer a principled approach to network representation, but rely on correct specification of both geometry and link function. Real-world networks often violate these assumptions, exhibiting geometric mismatch and structural anomalies that break standard metric properties. We show that such misspecification pushes the data-generating distribution outside the model class, causing Bayesian inference to become overconfident and poorly calibrated. To address this, we propose a generalized posterior framework for random geometric graphs. We introduce Link-Sequential R-SafeBayes, a method that exploits dyadic conditional independence to estimate prequential risk and adaptively tune posterior regularization. Experiments on synthetic and real-world networks demonstrate improved calibration, better link prediction performance, and a reliable criterion for selecting latent geometries across Euclidean, spherical, and hyperbolic spaces.


Markov Chain Decoders Overcome the Heavy-Tail Limitations of Lipschitz Generative Models

arXiv.org Machine Learning

Heavy-tailed distributions are prevalent in performance evaluation, network traffic, and risk modeling. This behavior poses a fundamental challenge for modern deep generative models. Standard Variational Autoencoders (VAEs) employ Gaussian decoder likelihoods and Lipschitz-constrained neural networks, a combination that is structurally incapable of producing heavy-tailed outputs: the Gaussian tail decays exponentially, and Lipschitz continuity prevents the decoder from amplifying rare events from the latent space input to sufficiently overcome this decay. We provide both a theoretical characterization of this limitation and a controlled empirical demonstration using synthetic Pareto data across a grid of tail indices $ฮฑ$ $\in$ {2, 3, 5, 30} and dimensions d $\in$ {1, 5, 10}. As a solution, we replace the Gaussian decoder with a Phase-Type (PH) distribution based on Markov chains, while keeping the encoder, latent space, and training procedure identical. PH distributions allow for arbitrarily precise approximations of any positive-valued distributions, including heavy-tailed families. Experiments showed that the PH-based model reduces tail Kolmogorov-Smirnov distance by up to x6 and extreme quantile error by up to x10 compared to the Gaussian baseline for heavy-tailed data. These results demonstrate that integrating Markov chain-based distributions into the decoder of a generative model institutes a principled and practically effective solution to the heavy-tail generation problem.


Causal Inference with Categorical Unobserved Confounder via Mixture Learning

arXiv.org Machine Learning

Unobserved confounding is a fundamental challenge for estimating causal effects. To address unobserved confounding, recent literature has turned to two different approaches -- proxy variables and the use of multiple treatments. The first approach, commonly referred to as proximal causal inference, requires proxies to be assigned to specific asymmetric roles: treatment-inducing proxies (negative control exposures), variables that act as common causes of the treatment and outcome, and outcome-inducing proxies (negative control outcomes). In practice, however, identifying variables that satisfy these asymmetric roles can be difficult depending on the application domain. The second approach, commonly referred to as the ``Deconfounder," deals with multiple conditionally independent treatments. There has been limited progress towards developing a consistent estimation method for this setting. As the primary contribution of this work, we establish that causal effects are identifiable in both settings when the unobserved confounder is categorical under suitable conditions. Our approach builds on a mixture learning perspective: we show that the underlying confounding structure can be recovered by identifying the corresponding mixture distribution. We propose an estimation procedure based on tensor decomposition, which allows consistent recovery of the latent structure and comes with non-asymptotic guarantees. Simulation studies and real data experiments demonstrate that the proposed method performs well even with limited data.


SAGA: A Sequence-Adaptive Generative Architecture for Multi-Horizon Probabilistic Forecasting with Adaptive Temporal Conformal Prediction

arXiv.org Machine Learning

Microsimulation models used by ministries of finance and central banks rely on parametric processes for lifetime earnings that capture only first and second moments of the conditional distribution and miss long-range nonlinear structure. We propose SAGA, a decoder-only transformer for irregular tabular panel sequences, paired with a split conformal calibration wrapper that delivers individual-level prediction intervals with finite-sample marginal coverage guarantees. Trained on the longitudinal Swedish LISA register over 1990 to 2022, comprising 2,143,817 individuals and 61,284,903 person-years, the model forecasts annual labor earnings at horizons of one to thirty years and aggregates them by Monte Carlo into present-discounted lifetime earnings distributions. Against the canonical Guvenen, Karahan, Ozkan, and Song parametric process and tabular and recurrent baselines, SAGA reduces continuous ranked probability score by 31.9 percent at the ten-year horizon and mean absolute error by 37.7 percent at the twenty-year horizon. Conformal intervals achieve nominal coverage to within 0.4 percentage points marginally and within 2.4 percentage points on the worst-case demographic subgroup. The reconstructed lifetime earnings Gini coefficient is 0.327 against the partially observed truth of 0.341 and the GKOS estimate of 0.378. Model weights, calibration tables, and a synthetic equivalent dataset are released for replication outside the protected SCB MONA environment.


Conformal Prediction via Transported Beta Laws

arXiv.org Machine Learning

Split conformal prediction provides finite-sample marginal coverage under exchangeability, but this guarantee averages over the random calibration sample. We study instead the law of the calibration-conditional coverage induced by a realized conformal threshold. In the continuous i.i.d. setting this law is exactly $Beta(k,n+1-k)$, so the usual marginal guarantee corresponds to its mean. We take this beta law as a finite-sample reference object and quantify departures from it using Wasserstein distances on $[0,1]$. The framework yields direct bounds on marginal coverage gaps and on bad-calibration probabilities, and separates different sources of non-i.i.d. behavior according to how they deform the beta reference: test-side shift acts through a transport map on the coverage scale, while calibration dependence changes the order-statistic law itself. We instantiate the framework in scale-shift, clustered, and stationary mixing settings, where the induced deformations can be characterized explicitly or through Berry-Esseen approximations. Simulations on dependent processes confirm that the first-order approximation tracks the empirical Wasserstein distance even at moderate sample sizes.


ScheduleFree+: Scaling Learning-Rate-Free & Schedule-Free Learning to Large Language Models

arXiv.org Machine Learning

Schedule-Free Learning has shown promise as a practical anytime training method for machine learning, showing success across dozens of standard benchmark problems. However, strong performance for LLM training has only been demonstrated at small scales. We identify a number of fixes necessary to scale up Schedule-Free Learning to larger batch sizes and model sizes, and present a learning-rate-free and schedule-free method (ScheduleFree+) for training large language models which greatly outperforms Warmup-Stable-Decay (WSD) schedules. We also demonstrate that Schedule-Free Learning is most effective for long duration training, and at 1000 tokens per parameter, it outperforms SOTA schedules by 31%. Schedule-Free Learning provides a theoretical foundation for the use of model averaging and checkpoint merging during pretraining.


Learning Interpretable Point-Based Clinical Risk Scores via Direct Optimization

arXiv.org Machine Learning

Many clinical risk scores are deployed as additive rules with nonnegative integer points assigned to relevant binary predictive features. These integer weights not only make the score easier to use in practice but also promote sparsity in the resulting prediction model. Such risk scores are often derived by first fitting a regression model and then rounding the estimated coefficients to the nearest integer after appropriate scaling. This approach is computationally fast but does not guarantee optimality of the resulting score. Alternatively, one may search over all possible integer weights to directly optimize a value function by posing the problem as an integer programming task. However, the associated computational burden can be substantial, especially when the value function is nonconcave or even discontinuous. In this paper, we develop new machine learning algorithms that employ a flexible greedy optimization strategy to learn such additive scoring directly under explicit and sensible optimality objectives. We apply the proposed method to a large electronic health record (EHR) cohort in Epic Cosmos to construct an integer-weighted comorbidity score for measuring the risk of post-discharge mortality. We also conduct a simulation study to examine the finite-sample operating characteristics.


Dual-Channel Tensor Neural Networks: Finite-Sample Theory and Conformal Structure Selection

arXiv.org Machine Learning

Tensor-valued data arise naturally in neuroimaging, genomics, climate science, and spatiotemporal networks, where multilinear dependencies across modes carry information that is destroyed under vectorization. Existing approaches either impose a single low-rank structure, which can miss localized signal, or treat the tensor as a long vector, which discards its multiway geometry. We propose a *Dual-Channel Tensor Neural Network* (DC-TNN) that decomposes each tensor input into a low-rank core and a sparse refinement, and processes the two components through coupled neural channels. The framework is structure-agnostic and accommodates CP, Tucker, and tensor-train cores within a single architecture. For estimation, we establish non-asymptotic risk bounds for the DC-TNN estimator that decompose into network approximation, core estimation, and refinement-selection terms, and show that the effective dimension is determined jointly by the core rank and refinement sparsity rather than by the ambient tensor size. For inference, we develop a *structure-aware conformal ROC* procedure that calibrates within the core-refinement latent space and produces ROC and AUC confidence bands with finite-sample, distribution-free coverage. Building on this, we propose a *conformal structure selector* that, to our knowledge, is the *first distribution-free procedure* for choosing among candidate tensor decompositions with finite-sample validity. Simulations and an analysis of a protein dataset demonstrate competitive predictive accuracy, reliable uncertainty quantification, and consistent recovery of the tensor structure.


The Thermodynamic Costs of Simple Linear Regression

arXiv.org Machine Learning

The construction of models from data is a significant contributor to the energetic costs of computation. Because of this, understanding how foundational thermodynamic bounds apply to modeling algorithms will be increasingly important. Here, we study the thermodynamic costs of a basic and fundamental modeling algorithm: simple linear regression. Following Landauer, we approximate the thermodynamic lower bound on irreversibly performing both exact linear regression and linear regression via stochastic gradient descent as implemented on floating-point numbers. From this, we derive energycost aware scaling laws for the optimal dataset size for training a linear regression model given a generalization error dependent demand for inference. Additionally, we discuss a method to lower bound the entropy production from the mismatch cost for algorithms with continuous input variables.


Precision Physical Activity Prescription via Reinforcement Learning for Functional Actions

arXiv.org Machine Learning

Physical activity (PA) plays an important role in maintaining and improving health. Daily steps have been a key PA measure that is easily accessible with common wearable devices. However, methods are lacking to recommend a personalized optimal distribution of daily steps over a period of time for the best of certain health biomarkers. In this paper, we fill this void based on the data from the All of Us Research Program which includes months of step counts as well as repeated measurements of key health biomarkers. We develop a new offline reinforcement learning (RL) algorithm to learn personalized and optimal PA distributions associated with cardiometabolic risk, where the action is a function representing the daily step distribution over a period of time. Simulation studies demonstrate the advantage of the proposed approach over existing continuous-action RL methods. The learned optimal policy from the All of Us data generally suggests people take more daily steps and also follow a more consistent pattern of PA over time while offering tailored recommendations for subgroups in blood glucose level, body mass index, blood pressure, age, and sex.