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Informed Initialization for Bayesian Optimization and Active Learning

Neural Information Processing Systems

Bayesian Optimization (BO) is a widely used method for optimizing expensive black-box functions, relying on probabilistic surrogate models such as Gaussian Processes (GPs). The quality of the surrogate model is crucial for good optimization performance, especially in the few-shot setting where only a small number of batches of points can be evaluated. In this setting, the initialization plays a critical role in shaping the surrogate's predictive quality and guiding subsequent optimization. Despite this, practitioners typically rely on (quasi-)random designs to cover the input space. However, such approaches neglect two key factors: (a) random designs may not be space-filling, and (b) efficient hyperparameter learning during initialization is essential for high-quality prediction, which may conflict with space-filling designs. To address these limitations, we propose Hyperparameter-Informed Predictive Exploration (HIPE), a novel acquisition strategy that balances space-filling exploration with hyperparameter learning using information-theoretic principles. We derive a closed-form expression for HIPE in the GP setting and demonstrate its effectiveness through extensive experiments in active learning and few-shot BO. Our results show that HIPE outperforms standard initialization strategies in terms of predictive accuracy, hyperparameter identification, and optimization performance, particularly in large-batch, few-shot settings relevant to many real-world BO applications.


Deferring Concept Bottleneck Models: Learning to Defer Interventions to Inaccurate Experts

Neural Information Processing Systems

Concept Bottleneck Models (CBMs) are interpretable machine learning models that ground their predictions on human-understandable concepts, allowing for targeted interventions in their decision-making process. However, when intervened on, CBMs assume the availability of humans that can identify the need to intervene and always provide correct interventions. Both assumptions are unrealistic and impractical, considering labor costs and human error-proneness. In contrast, Learning to Defer (L2D) extends supervised learning by allowing machine learning models to identify cases where a human is more likely to be correct than the model, thus leading to deferring systems with improved performance. In this work, we gain inspiration from L2D and propose Deferring CBMs (DCBMs), a novel framework that allows CBMs to learn when an intervention is needed. To this end, we model DCBMs as a composition of deferring systems and derive a consistent L2D loss to train them. Moreover, by relying on a CBM architecture, DCBMs can explain the reasons for deferring on the final task. Our results show that DCBMs can achieve high predictive performance and interpretability by deferring only when needed.


Tree-Guided Diffusion Planner

Neural Information Processing Systems

Planning with pretrained diffusion models has emerged as a promising approach for solving test-time guided control problems. Standard gradient guidance typically performs optimally under convex, differentiable reward landscapes. However, it shows substantially reduced effectiveness in real-world scenarios with non-convex objectives, non-differentiable constraints, and multi-reward structures. Furthermore, recent supervised planning approaches require task-specific training or value estimators, which limits test-time flexibility and zero-shot generalization. We propose a Tree-guided Diffusion Planner (TDP), a zero-shot test-time planning framework that balances exploration and exploitation through structured trajectory generation. We frame test-time planning as a tree search problem using a bi-level sampling process: (1) diverse parent trajectories are produced via training-free particle guidance to encourage broad exploration, and (2) sub-trajectories are refined through fast conditional denoising guided by task objectives. TDP addresses the limitations of gradient guidance by exploring diverse trajectory regions and harnessing gradient information across this expanded solution space using only pretrained models and test-time reward signals. We evaluate TDP on three diverse tasks: maze gold-picking, robot arm block manipulation, and AntMaze multi-goal exploration. TDP consistently outperforms state-of-the-art approaches on all tasks.


Automatic Auxiliary Task Selection and Adaptive Weighting Boost Molecular Property Prediction

Neural Information Processing Systems

Recent studies in (ML) for biological research focus on investigating molecular properties to accelerate drug discovery. However, limited labeled molecular data often hampers the performance of ML models. A common strategy to mitigate data scarcity is leveraging auxiliary learning tasks to provide additional supervision, but selecting effective auxiliary tasks requires substantial domain expertise and manual effort, and their inclusion does not always guarantee performance gains. To overcome these challenges, we introduce (AutAuT), a fully automated framework that seamlessly retrieves auxiliary tasks using large language models and adaptively integrates them through a novel weighting mechanism. By automatically emphasizing auxiliary tasks aligned with the primary objective, AutAuT significantly enhances predictive accuracy while reducing negative impacts from irrelevant tasks. Extensive evaluations demonstrate that AutAuT outperforms auxiliary task-based approaches and advanced molecular property prediction models.


Diagnosing and Addressing Pitfalls in KG-RAG Datasets: Toward More Reliable Benchmarking

Neural Information Processing Systems

Knowledge Graph Question Answering (KGQA) systems rely on high-quality benchmarks to evaluate complex multi-hop reasoning. However, despite their widespread use, popular datasets such as WebQSP and CWQ suffer from critical quality issues, including inaccurate or incomplete ground-truth annotations, poorly constructed questions that are ambiguous, trivial, or unanswerable, and outdated or inconsistent knowledge. Through a manual audit of 16 popular KGQA datasets--including WebQSP and CWQ--we find that the average factual correctness rate is only 57%. To address these issues, we introduce KGQAGen, an LLM-in-the-loop framework that systematically resolves these pitfalls. KGQAGen combines structured knowledge grounding, LLM-guided generation, and symbolic verification to produce challenging and verifiable QA instances. Using KGQAGen, we construct KGQAGen-10k, a 10K-scale benchmark grounded in Wikidata, and evaluate a diverse set of KG-RAG models. Experimental results demonstrate that even state-of-the-art systems struggle on this benchmark, highlighting its ability to expose limitations of existing models. Our findings advocate for more rigorous benchmark construction and position KGQAGen as a scalable framework for advancing KGQA evaluation.


Text-to-Code Generation for Modular Building Layouts in Building Information Modeling

Neural Information Processing Systems

We present Text2MBL, a text-to-code generation framework that generates executable Building Information Modeling (BIM) code directly from textual descriptions of modular building layout (MBL) design. Unlike conventional layout generation approaches that operate in 2D space, Text2MBL produces fully parametric, semantically rich BIM layouts through on the fly code instantiation. To address MBLs' unique challenges due to their hierarchical three-tier structure: modules (physical building blocks), units (self-contained dwellings), and rooms (functional spaces), we developed an object-oriented code architecture and fine-tuned large language models to output structured action sequences in code format. To train and evaluate the framework, we curated a dataset of paired descriptions and ground truth layouts drawn from real world modular housing projects. Performance were assessed using metrics for executable validity, semantic fidelity, and geometric consistency. By tightly unifying natural language understanding with BIM code generation, Text2MBL establishes a scalable pipeline from high-level conceptual design to automation-ready modular construction workflows.


CellVerse: Do Large Language Models Really Understand Cell Biology?

Neural Information Processing Systems

Recent studies have demonstrated the feasibility of modeling single-cell data as natural languages and the potential of leveraging powerful large language models (LLMs) for understanding cell biology. However, a comprehensive evaluation of LLMs' performance on language-driven single-cell analysis tasks still remains unexplored. Motivated by this challenge, we introduce CellVerse, a unified language-centric question-answering benchmark that integrates four types of single-cell multi-omics data and encompasses three hierarchical levels of single-cell analysis tasks: cell type annotation (cell-level), drug response prediction (drug-level), and perturbation analysis (gene-level). Going beyond this, we systematically evaluate the performance across 14 open-source and closed-source LLMs ranging 160M $\rightarrow$ 671B on CellVerse. Remarkably, the experimental results reveal: (1) Existing specialist models (C2S-Pythia) fail to make reasonable decisions across all sub-tasks within CellVerse, while generalist models such as Qwen, Llama, GPT, and DeepSeek family models exhibit preliminary understanding capabilities within the realm of cell biology.


3DPE-Gaze:Unlocking the Potential of 3D Facial Priors for Generalized Gaze Estimation

Neural Information Processing Systems

In recent years, face-based deep-learning gaze estimation methods have achieved significant advancements. However, while face images provide supplementary information beneficial for gaze inference, the substantial extraneous information they contain also increases the risk of overfitting during model training and compromises generalization capability. To alleviate this problem, we propose the 3DPE-Gaze framework, explicitly modeling 3D facial priors for feature decoupling and generalized gaze estimation. The 3DPE-Gaze framework consists of two core modules: the 3D Geometric Prior Module (3DGP) incorporating the FLAME model to parameterize facial structures and gaze-irrelevant facial appearances while extracting gaze features; the Semantic Concept Alignment Module (SCAM) separates gaze-related and unrelated concepts through CLIP-guided contrastive learning. Finally, the 3DPE-Gaze framework combines 3D facial landmark as prior for generalized gaze estimation. Experimental results show that 3DPE-Gaze outperforms existing state-of-the-art methods on four major cross-domain tasks, with particularly outstanding performance in challenging scenarios such as lighting variations, extreme head poses, and glasses occlusion.


Why Real-Life Disclosure Day Will Look Nothing Like Steven Spielberg's New Movie

WIRED

Why Real-Life Disclosure Day Will Look Nothing Like Steven Spielberg's New Movie Previous landmark scientific discoveries like the Higgs boson provide a better template for what it will take to confirm whether aliens have made contact with Earth. Steven Spielberg's new film imagines the moment 8 billion humans find out that we are not alone in the universe. The movie, which opens in US theaters on June 12, is a fictional account of the government cover-up and subsequent "disclosure" of evidence that aliens have contacted Earth. The UFO community has been chasing that type of cinematic big reveal for 80 years. But it's more likely that monumental scientific discoveries, like the detection of the Higgs boson in 2012 and the confirmation of gravitational waves in 2016, are a better guideline for how real-world disclosure is likely to play out: through long-running research and with verifiable results.


The Quest for Universal Master Key Filters in DS-CNNs

Neural Information Processing Systems

A recent study has proposed the ``Master Key Filters Hypothesis for convolutional neural network filters. This paper extends this hypothesis by radically constraining its scope to a single set of just 8 universal filters that depthwise separable convolutional networks inherently converge to. While conventional DS-CNNs employ thousands of distinct trained filters, our analysis reveals these filters are predominantly linear shifts (ax+b) of our discovered universal set. Through systematic unsupervised search, we extracted these fundamental patterns across different architectures and datasets. Remarkably, networks initialized with these 8 unique frozen filters achieve over 80\% ImageNet accuracy, and even outperform models with thousands of trainable parameters when applied to smaller datasets. The identified master key filters closely match Difference of Gaussians (DoGs), Gaussians, and their derivatives, structures that are not only fundamental to classical image processing but also strikingly similar to receptive fields in mammalian visual systems. Our findings provide compelling evidence that depthwise convolutional layers naturally gravitate toward this fundamental set of spatial operators regardless of task or architecture. This work offers new insights for understanding generalization and transfer learning through the universal language of these master key filters.