In this paper we study output coding for multi-label prediction. For a multi-label output coding to be discriminative, it is important that codewords for different label vectors are significantly different from each other. In the meantime, unlike in traditional coding theory, codewords in output coding are to be predicted from the input, so it is also critical to have a predictable label encoding. To find output codes that are both discriminative and predictable, we first propose a max-margin formulation that naturally captures these two properties. We then convert it to a metric learning formulation, but with an exponentially large number of constraints as commonly encountered in structured prediction problems. Without a label structure for tractable inference, we use overgenerating (i.e., relaxation) techniques combined with the cutting plane method for optimization. In our empirical study, the proposed output coding scheme outperforms a variety of existing multi-label prediction methods for image, text and music classification.

In this paper, a novel learning paradigm is presented to automatically identify groups of informative and correlated features from very high dimensions. Specifically, we explicitly incorporate correlation measures as constraints and then propose an efficient embedded feature selection method using recently developed cutting plane strategy. The benefits of the proposed algorithm are twofolds. First, it can identify the optimal discriminative and uncorrelated feature subset to the output labels, denoted here as Support Features, which brings about significant improvements in prediction performance over other state of the art feature selection methods considered in the paper. Second, during the learning process, the underlying group structures of correlated features associated with each support feature, denoted as Affiliated Features, can also be discovered without any additional cost. These affiliated features serve to improve the interpretations on the learning tasks. Extensive empirical studies on both synthetic and very high dimensional real-world datasets verify the validity and efficiency of the proposed method. To address this issue, a plethora of feature selection methods have been developed in the recent decades.

In recent years, the crucial importance of metrics in machine learning algorithms has led to an increasing interest for optimizing distance and similarity functions. Most of the state of the art focus on learning Mahalanobis distances (requiring to fulfill a constraint of positive semi-definiteness) for use in a local k-NN algorithm. However, no theoretical link is established between the learned metrics and their performance in classification. In this paper, we make use of the formal framework of good similarities introduced by Balcan et al. to design an algorithm for learning a non PSD linear similarity optimized in a nonlinear feature space, which is then used to build a global linear classifier. We show that our approach has uniform stability and derive a generalization bound on the classification error. Experiments performed on various datasets confirm the effectiveness of our approach compared to state-of-the-art methods and provide evidence that (i) it is fast, (ii) robust to overfitting and (iii) produces very sparse classifiers.

The paper introduces a penalized matrix estimation procedure aiming at solutions which are sparse and low-rank at the same time. Such structures arise in the context of social networks or protein interactions where underlying graphs have adjacency matrices which are block-diagonal in the appropriate basis. We introduce a convex mixed penalty which involves $\ell_1$-norm and trace norm simultaneously. We obtain an oracle inequality which indicates how the two effects interact according to the nature of the target matrix. We bound generalization error in the link prediction problem. We also develop proximal descent strategies to solve the optimization problem efficiently and evaluate performance on synthetic and real data sets.

We present a novel approach to the formulation and the resolution of sparse Linear Discriminant Analysis (LDA). Our proposal, is based on penalized Optimal Scoring. It has an exact equivalence with penalized LDA, contrary to the multi-class approaches based on the regression of class indicator that have been proposed so far. Sparsity is obtained thanks to a group-Lasso penalty that selects the same features in all discriminant directions. Our experiments demonstrate that this approach generates extremely parsimonious models without compromising prediction performances. Besides prediction, the resulting sparse discriminant directions are also amenable to low-dimensional representations of data. Our algorithm is highly efficient for medium to large number of variables, and is thus particularly well suited to the analysis of gene expression data.

We consider the problem of function estimation in the case where an underlying causal model can be inferred. This has implications for popular scenarios such as covariate shift, concept drift, transfer learning and semi-supervised learning. We argue that causal knowledge may facilitate some approaches for a given problem, and rule out others. In particular, we formulate a hypothesis for when semi-supervised learning can help, and corroborate it with empirical results.

In this paper, we review the problem of matrix completion and expose its intimate relations with algebraic geometry, combinatorics and graph theory. We present the first necessary and sufficient combinatorial conditions for matrices of arbitrary rank to be identifiable from a set of matrix entries, yielding theoretical constraints and new algorithms for the problem of matrix completion. We conclude by algorithmically evaluating the tightness of the given conditions and algorithms for practically relevant matrix sizes, showing that the algebraic-combinatorial approach can lead to improvements over stateof-the-art matrix completion methods.

We consider analysis of relational data (a matrix), in which the rows correspond to subjects (e.g., people) and the columns correspond to attributes. The elements of the matrix may be a mix of real and categorical. Each subject and attribute is characterized by a latent binary feature vector, and an inferred matrix maps each row-column pair of binary feature vectors to an observed matrix element. The latent binary features of the rows are modeled via a multivariate Gaussian distribution with low-rank covariance matrix, and the Gaussian random variables are mapped to latent binary features via a probit link. The same type construction is applied jointly to the columns. The model infers latent, low-dimensional binary features associated with each row and each column, as well correlation structure between all rows and between all columns.

The past decade has seen substantial work on the use of non-negative matrix factorization and its probabilistic counterparts for audio source separation. Although able to capture audio spectral structure well, these models neglect the non-stationarity and temporal dynamics that are important properties of audio. The recently proposed non-negative factorial hidden Markov model (N-FHMM) introduces a temporal dimension and improves source separation performance. However, the factorial nature of this model makes the complexity of inference exponential in the number of sound sources. Here, we present a Bayesian variant of the N-FHMM suited to an efficient variational inference algorithm, whose complexity is linear in the number of sound sources. Our algorithm performs comparably to exact inference in the original N-FHMM but is significantly faster. In typical configurations of the N-FHMM, our method achieves around a 30x increase in speed.

Multiple kernel learning algorithms are proposed to combine kernels in order to obtain a better similarity measure or to integrate feature representations coming from different data sources. Most of the previous research on such methods is focused on the computational efficiency issue. However, it is still not feasible to combine many kernels using existing Bayesian approaches due to their high time complexity. We propose a fully conjugate Bayesian formulation and derive a deterministic variational approximation, which allows us to combine hundreds or thousands of kernels very efficiently. We briefly explain how the proposed method can be extended for multiclass learning and semi-supervised learning. Experiments with large numbers of kernels on benchmark data sets show that our inference method is quite fast, requiring less than a minute. On one bioinformatics and three image recognition data sets, our method outperforms previously reported results with better generalization performance.