Goto

Collaborating Authors

 Genre


R\'enyi Divergence and Kullback-Leibler Divergence

arXiv.org Machine Learning

R\'enyi divergence is related to R\'enyi entropy much like Kullback-Leibler divergence is related to Shannon's entropy, and comes up in many settings. It was introduced by R\'enyi as a measure of information that satisfies almost the same axioms as Kullback-Leibler divergence, and depends on a parameter that is called its order. In particular, the R\'enyi divergence of order 1 equals the Kullback-Leibler divergence. We review and extend the most important properties of R\'enyi divergence and Kullback-Leibler divergence, including convexity, continuity, limits of $\sigma$-algebras and the relation of the special order 0 to the Gaussian dichotomy and contiguity. We also show how to generalize the Pythagorean inequality to orders different from 1, and we extend the known equivalence between channel capacity and minimax redundancy to continuous channel inputs (for all orders) and present several other minimax results.


Automated adaptive inference of coarse-grained dynamical models in systems biology

arXiv.org Machine Learning

Cellular regulatory dynamics is driven by large and intricate networks of interactions at the molecular scale, whose sheer size obfuscates understanding. In light of limited experimental data, many parameters of such dynamics are unknown, and thus models built on the detailed, mechanistic viewpoint overfit and are not predictive. At the other extreme, simple ad hoc models of complex processes often miss defining features of the underlying systems. Here we propose an approach that instead constructs phenomenological, coarse-grained models of network dynamics that automatically adapt their complexity to the amount of available data. Such adaptive models lead to accurate predictions even when microscopic details of the studied systems are unknown due to insufficient data. The approach is computationally tractable, even for a relatively large number of dynamical variables, allowing its software realization, named Sir Isaac, to make successful predictions even when important dynamic variables are unobserved. For example, it matches the known phase space structure for simulated planetary motion data, avoids overfitting in a complex biological signaling system, and produces accurate predictions for a yeast glycolysis model with only tens of data points and over half of the interacting species unobserved.


Solution Path Clustering with Adaptive Concave Penalty

arXiv.org Machine Learning

Fast accumulation of large amounts of complex data has created a need for more sophisticated statistical methodologies to discover interesting patterns and better extract information from these data. The large scale of the data often results in challenging high-dimensional estimation problems where only a minority of the data shows specific grouping patterns. To address these emerging challenges, we develop a new clustering methodology that introduces the idea of a regularization path into unsupervised learning. A regularization path for a clustering problem is created by varying the degree of sparsity constraint that is imposed on the differences between objects via the minimax concave penalty with adaptive tuning parameters. Instead of providing a single solution represented by a cluster assignment for each object, the method produces a short sequence of solutions that determines not only the cluster assignment but also a corresponding number of clusters for each solution. The optimization of the penalized loss function is carried out through an MM algorithm with block coordinate descent. The advantages of this clustering algorithm compared to other existing methods are as follows: it does not require the input of the number of clusters; it is capable of simultaneously separating irrelevant or noisy observations that show no grouping pattern, which can greatly improve data interpretation; it is a general methodology that can be applied to many clustering problems. We test this method on various simulated datasets and on gene expression data, where it shows better or competitive performance compared against several clustering methods.


Fast Exact Search in Hamming Space with Multi-Index Hashing

arXiv.org Artificial Intelligence

There is growing interest in representing image data and feature descriptors using compact binary codes for fast near neighbor search. Although binary codes are motivated by their use as direct indices (addresses) into a hash table, codes longer than 32 bits are not being used as such, as it was thought to be ineffective. We introduce a rigorous way to build multiple hash tables on binary code substrings that enables exact k-nearest neighbor search in Hamming space. The approach is storage efficient and straightforward to implement. Theoretical analysis shows that the algorithm exhibits sub-linear run-time behavior for uniformly distributed codes. Empirical results show dramatic speedups over a linear scan baseline for datasets of up to one billion codes of 64, 128, or 256 bits.


A Comparative study Between Fuzzy Clustering Algorithm and Hard Clustering Algorithm

arXiv.org Artificial Intelligence

Data clustering is an important area of data mining. This is an unsupervised study where data of similar types are put into one cluster while data of another types are put into different cluster. Fuzzy C means is a very important clustering technique based on fuzzy logic. Also we have some hard clustering techniques available like K-means among the popular ones. In this paper a comparative study is done between Fuzzy clustering algorithm and hard clustering algorithm.


Unsupervised Text Extraction from G-Maps

arXiv.org Artificial Intelligence

This paper represents an text extraction method from Google maps, GIS maps/images. Due to an unsupervised approach there is no requirement of any prior knowledge or training set about the textual and non-textual parts. Fuzzy CMeans clustering technique is used for image segmentation and Prewitt method is used to detect the edges. Connected component analysis and gridding technique enhance the correctness of the results. The proposed method reaches 98.5% accuracy level on the basis of experimental data sets.


Improved Separations of Regular Resolution from Clause Learning Proof Systems

Journal of Artificial Intelligence Research

This paper studies the relationship between resolution and conflict driven clause learning (CDCL) without restarts, and refutes some conjectured possible separations. We prove that the guarded, xor-ified pebbling tautology clauses, which Urquhart proved are hard for regular resolution, as well as the guarded graph tautology clauses of Alekhnovich, Johannsen, Pitassi, and Urquhart have polynomial size pool resolution refutations that use only input lemmas as learned clauses. For the latter set of clauses, we extend this to prove that a CDCL search without restarts can refute these clauses in polynomial time, provided it makes the right choices for decision literals and clause learning. This holds even if the CDCL search is required to greedily process conflicts arising from unit propagation. This refutes the conjecture that the guarded graph tautology clauses or the guarded xor-ified pebbling tautology clauses can be used to separate CDCL without restarts from general resolution. Together with subsequent results by Buss and Ko lodziejczyk, this means we lack any good conjectures about how to establish the exact logical strength of conflict-driven clause learning without restarts.


Most Correlated Arms Identification

arXiv.org Machine Learning

We study the problem of finding the most mutually correlated arms among many arms. We show that adaptive arms sampling strategies can have significant advantages over the non-adaptive uniform sampling strategy. Our proposed algorithms rely on a novel correlation estimator. The use of this accurate estimator allows us to get improved results for a wide range of problem instances.


GP-Localize: Persistent Mobile Robot Localization using Online Sparse Gaussian Process Observation Model

arXiv.org Machine Learning

Central to robot exploration and mapping is the task of persistent localization in environmental fields characterized by spatially correlated measurements. This paper presents a Gaussian process localization (GP-Localize) algorithm that, in contrast to existing works, can exploit the spatially correlated field measurements taken during a robot's exploration (instead of relying on prior training data) for efficiently and scalably learning the GP observation model online through our proposed novel online sparse GP. As a result, GP-Localize is capable of achieving constant time and memory (i.e., independent of the size of the data) per filtering step, which demonstrates the practical feasibility of using GPs for persistent robot localization and autonomy. Empirical evaluation via simulated experiments with real-world datasets and a real robot experiment shows that GP-Localize outperforms existing GP localization algorithms.


Discrete Restricted Boltzmann Machines

arXiv.org Machine Learning

A restricted Boltzmann machine (RBM) is a probabilistic graphical model with bipartite interactions between an observed set and a hidden set of units [see Smolensky, 1986, Freund and Haussler, 1991, Hinton, 2002, 2010]. A characterizing property of these models is that the observed units are independent given the states of the hidden units and vice versa. This is a consequence of the bipartiteness of the interaction graph and does not depend on the units' state spaces. Typically RBMs are defined with binary units, but other types of units have also been considered, including continuous, discrete, and mixed type units [see Welling et al., 2005, Marks and Movellan, 2001, Salakhutdinov et al., 2007, Dahl et al., 2012, Tran et al., 2011]. We study discrete RBMs, also called multinomial or softmax RBMs, which are special types of exponential family harmoniums [Welling et al., 2005].