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Deep Gaussian Processes for Regression using Approximate Expectation Propagation

arXiv.org Machine Learning

Deep Gaussian processes (DGPs) are multi-layer hierarchical generalisations of Gaussian processes (GPs) and are formally equivalent to neural networks with multiple, infinitely wide hidden layers. DGPs are nonparametric probabilistic models and as such are arguably more flexible, have a greater capacity to generalise, and provide better calibrated uncertainty estimates than alternative deep models. This paper develops a new approximate Bayesian learning scheme that enables DGPs to be applied to a range of medium to large scale regression problems for the first time. The new method uses an approximate Expectation Propagation procedure and a novel and efficient extension of the probabilistic backpropagation algorithm for learning. We evaluate the new method for non-linear regression on eleven real-world datasets, showing that it always outperforms GP regression and is almost always better than state-of-the-art deterministic and sampling-based approximate inference methods for Bayesian neural networks. As a by-product, this work provides a comprehensive analysis of six approximate Bayesian methods for training neural networks.


Online Low-Rank Subspace Learning from Incomplete Data: A Bayesian View

arXiv.org Machine Learning

Extracting the underlying low-dimensional space where high-dimensional signals often reside has long been at the center of numerous algorithms in the signal processing and machine learning literature during the past few decades. At the same time, working with incomplete (partly observed) large scale datasets has recently been commonplace for diverse reasons. This so called {\it big data era} we are currently living calls for devising online subspace learning algorithms that can suitably handle incomplete data. Their envisaged objective is to {\it recursively} estimate the unknown subspace by processing streaming data sequentially, thus reducing computational complexity, while obviating the need for storing the whole dataset in memory. In this paper, an online variational Bayes subspace learning algorithm from partial observations is presented. To account for the unawareness of the true rank of the subspace, commonly met in practice, low-rankness is explicitly imposed on the sought subspace data matrix by exploiting sparse Bayesian learning principles. Moreover, sparsity, {\it simultaneously} to low-rankness, is favored on the subspace matrix by the sophisticated hierarchical Bayesian scheme that is adopted. In doing so, the proposed algorithm becomes adept in dealing with applications whereby the underlying subspace may be also sparse, as, e.g., in sparse dictionary learning problems. As shown, the new subspace tracking scheme outperforms its state-of-the-art counterparts in terms of estimation accuracy, in a variety of experiments conducted on simulated and real data.


DECOrrelated feature space partitioning for distributed sparse regression

arXiv.org Machine Learning

Fitting statistical models is computationally challenging when the sample size or the dimension of the dataset is huge. An attractive approach for down-scaling the problem size is to first partition the dataset into subsets and then fit using distributed algorithms. The dataset can be partitioned either horizontally (in the sample space) or vertically (in the feature space). While the majority of the literature focuses on sample space partitioning, feature space partitioning is more effective when $p\gg n$. Existing methods for partitioning features, however, are either vulnerable to high correlations or inefficient in reducing the model dimension. In this paper, we solve these problems through a new embarrassingly parallel framework named DECO for distributed variable selection and parameter estimation. In DECO, variables are first partitioned and allocated to $m$ distributed workers. The decorrelated subset data within each worker are then fitted via any algorithm designed for high-dimensional problems. We show that by incorporating the decorrelation step, DECO can achieve consistent variable selection and parameter estimation on each subset with (almost) no assumptions. In addition, the convergence rate is nearly minimax optimal for both sparse and weakly sparse models and does NOT depend on the partition number $m$. Extensive numerical experiments are provided to illustrate the performance of the new framework.


Generalized Conjugate Gradient Methods for $\ell_1$ Regularized Convex Quadratic Programming with Finite Convergence

arXiv.org Machine Learning

The conjugate gradient (CG) method is an efficient iterative method for solving large-scale strongly convex quadratic programming (QP). In this paper we propose some generalized CG (GCG) methods for solving the $\ell_1$-regularized (possibly not strongly) convex QP that terminate at an optimal solution in a finite number of iterations. At each iteration, our methods first identify a face of an orthant and then either perform an exact line search along the direction of the negative projected minimum-norm subgradient of the objective function or execute a CG subroutine that conducts a sequence of CG iterations until a CG iterate crosses the boundary of this face or an approximate minimizer of over this face or a subface is found. We determine which type of step should be taken by comparing the magnitude of some components of the minimum-norm subgradient of the objective function to that of its rest components. Our analysis on finite convergence of these methods makes use of an error bound result and some key properties of the aforementioned exact line search and the CG subroutine. We also show that the proposed methods are capable of finding an approximate solution of the problem by allowing some inexactness on the execution of the CG subroutine. The overall arithmetic operation cost of our GCG methods for finding an $\epsilon$-optimal solution depends on $\epsilon$ in $O(\log(1/\epsilon))$, which is superior to the accelerated proximal gradient method [2,23] that depends on $\epsilon$ in $O(1/\sqrt{\epsilon})$. In addition, our GCG methods can be extended straightforwardly to solve box-constrained convex QP with finite convergence. Numerical results demonstrate that our methods are very favorable for solving ill-conditioned problems.


Recovering metric from full ordinal information

arXiv.org Machine Learning

Given a geodesic space (E, d), we show that full ordinal knowledge on the metric d-i.e. knowledge of the function D d : (w, x, y, z) $\rightarrow$ 1 d(w,x)$\le$d(y,z) , determines uniquely-up to a constant factor-the metric d. For a subspace En of n points of E, converging in Hausdorff distance to E, we construct a metric dn on En, based only on the knowledge of D d on En and establish a sharp upper bound of the Gromov-Hausdorff distance between (En, dn) and (E, d).


Parallel and Distributed Block-Coordinate Frank-Wolfe Algorithms

arXiv.org Machine Learning

We develop parallel and distributed Frank-Wolfe algorithms; the former on shared memory machines with mini-batching, and the latter in a delayed update framework. Whenever possible, we perform computations asynchronously, which helps attain speedups on multicore machines as well as in distributed environments. Moreover, instead of worst-case bounded delays, our methods only depend (mildly) on \emph{expected} delays, allowing them to be robust to stragglers and faulty worker threads. Our algorithms assume block-separable constraints, and subsume the recent Block-Coordinate Frank-Wolfe (BCFW) method~\citep{lacoste2013block}. Our analysis reveals problem-dependent quantities that govern the speedups of our methods over BCFW. We present experiments on structural SVM and Group Fused Lasso, obtaining significant speedups over competing state-of-the-art (and synchronous) methods.


Multidimensional Scaling in the Poincare Disk

arXiv.org Machine Learning

Multidimensional scaling (MDS) is a class of projective algorithms traditionally used in Euclidean space to produce two- or three-dimensional visualizations of datasets of multidimensional points or point distances. More recently however, several authors have pointed out that for certain datasets, hyperbolic target space may provide a better fit than Euclidean space. In this paper we develop PD-MDS, a metric MDS algorithm designed specifically for the Poincare disk (PD) model of the hyperbolic plane. Emphasizing the importance of proceeding from first principles in spite of the availability of various black box optimizers, our construction is based on an elementary hyperbolic line search and reveals numerous particulars that need to be carefully addressed when implementing this as well as more sophisticated iterative optimization methods in a hyperbolic space model.


Orthogonal Sparse PCA and Covariance Estimation via Procrustes Reformulation

arXiv.org Machine Learning

The problem of estimating sparse eigenvectors of a symmetric matrix attracts a lot of attention in many applications, especially those with high dimensional data set. While classical eigenvectors can be obtained as the solution of a maximization problem, existing approaches formulate this problem by adding a penalty term into the objective function that encourages a sparse solution. However, the resulting methods achieve sparsity at the expense of sacrificing the orthogonality property. In this paper, we develop a new method to estimate dominant sparse eigenvectors without trading off their orthogonality. The problem is highly non-convex and hard to handle. We apply the MM framework where we iteratively maximize a tight lower bound (surrogate function) of the objective function over the Stiefel manifold. The inner maximization problem turns out to be a rectangular Procrustes problem, which has a closed form solution. In addition, we propose a method to improve the covariance estimation problem when its underlying eigenvectors are known to be sparse. We use the eigenvalue decomposition of the covariance matrix to formulate an optimization problem where we impose sparsity on the corresponding eigenvectors. Numerical experiments show that the proposed eigenvector extraction algorithm matches or outperforms existing algorithms in terms of support recovery and explained variance, while the covariance estimation algorithms improve significantly the sample covariance estimator.


Scale-free network optimization: foundations and algorithms

arXiv.org Machine Learning

We investigate the fundamental principles that drive the development of scalable algorithms for network optimization. Despite the significant amount of work on parallel and decentralized algorithms in the optimization community, the methods that have been proposed typically rely on strict separability assumptions for objective function and constraints. Beside sparsity, these methods typically do not exploit the strength of the interaction between variables in the system. We propose a notion of correlation in constrained optimization that is based on the sensitivity of the optimal solution upon perturbations of the constraints. We develop a general theory of sensitivity of optimizers the extends beyond the infinitesimal setting. We present instances in network optimization where the correlation decays exponentially fast with respect to the natural distance in the network, and we design algorithms that can exploit this decay to yield dimension-free optimization. Our results are the first of their kind, and open new possibilities in the theory of local algorithms.


General Vector Machine

arXiv.org Machine Learning

The support vector machine (SVM) is an important class of learning machines for function approach, pattern recognition, and time-serious prediction, etc. It maps samples into the feature space by so-called support vectors of selected samples, and then feature vectors are separated by maximum margin hyperplane. The present paper presents the general vector machine (GVM) to replace the SVM. The support vectors are replaced by general project vectors selected from the usual vector space, and a Monte Carlo (MC) algorithm is developed to find the general vectors. The general project vectors improves the feature-extraction ability, and the MC algorithm can control the width of the separation margin of the hyperplane. By controlling the separation margin, we show that the maximum margin hyperplane can usually induce the overlearning, and the best learning machine is achieved with a proper separation margin. Applications in function approach, pattern recognition, and classification indicate that the developed method is very successful, particularly for small-set training problems. Additionally, our algorithm may induce some particular applications, such as for the transductive inference.