Knowledge bases of real-world facts about entities and their relationships are useful resources for a variety of natural language processing tasks. However, because knowledge bases are typically incomplete, it is useful to be able to perform link prediction or knowledge base completion, i.e., predict whether a relationship not in the knowledge base is likely to be true. This paper combines insights from several previous link prediction models into a new embedding model STransE that represents each entity as a low-dimensional vector, and each relation by two matrices and a translation vector. STransE is a simple combination of the SE and TransE models, but it obtains better link prediction performance on two benchmark datasets than previous embedding models. Thus, STransE can serve as a new baseline for the more complex models in the link prediction task.

The emergence and development of cancer is a consequence of the accumulation over time of genomic mutations involving a specific set of genes, which provides the cancer clones with a functional selective advantage. In this work, we model the order of accumulation of such mutations during the progression, which eventually leads to the disease, by means of probabilistic graphic models, i.e., Bayesian Networks (BNs). We investigate how to perform the task of learning the structure of such BNs, according to experimental evidence, adopting a global optimization meta-heuristics. In particular, in this work we rely on Genetic Algorithms, and to strongly reduce the execution time of the inference -- which can also involve multiple repetitions to collect statistically significant assessments of the data -- we distribute the calculations using both multi-threading and a multi-node architecture. The results show that our approach is characterized by good accuracy and specificity; we also demonstrate its feasibility, thanks to a 84x reduction of the overall execution time with respect to a traditional sequential implementation.

To obtain uncertainty estimates with real-world Bayesian deep learning models, practical inference approximations are needed. Dropout variational inference (VI) for example has been used for machine vision and medical applications, but VI can severely underestimates model uncertainty. Alpha-divergences are alternative divergences to VI's KL objective, which are able to avoid VI's uncertainty underestimation. But these are hard to use in practice: existing techniques can only use Gaussian approximating distributions, and require existing models to be changed radically, thus are of limited use for practitioners. We propose a re-parametrisation of the alpha-divergence objectives, deriving a simple inference technique which, together with dropout, can be easily implemented with existing models by simply changing the loss of the model. We demonstrate improved uncertainty estimates and accuracy compared to VI in dropout networks. We study our model's epistemic uncertainty far away from the data using adversarial images, showing that these can be distinguished from non-adversarial images by examining our model's uncertainty.

Even though active learning forms an important pillar of machine learning, deep learning tools are not prevalent within it. Deep learning poses several difficulties when used in an active learning setting. First, active learning (AL) methods generally rely on being able to learn and update models from small amounts of data. Recent advances in deep learning, on the other hand, are notorious for their dependence on large amounts of data. Second, many AL acquisition functions rely on model uncertainty, yet deep learning methods rarely represent such model uncertainty. In this paper we combine recent advances in Bayesian deep learning into the active learning framework in a practical way. We develop an active learning framework for high dimensional data, a task which has been extremely challenging so far, with very sparse existing literature. Taking advantage of specialised models such as Bayesian convolutional neural networks, we demonstrate our active learning techniques with image data, obtaining a significant improvement on existing active learning approaches. We demonstrate this on both the MNIST dataset, as well as for skin cancer diagnosis from lesion images (ISIC2016 task).

Proportional, Integral and Derivative (PID) control structures are still the main control tool being used in industrial applications, in particular in the process industry [1], but also in automotive applications [2] and in low-level control in robotics [3]. The large share of PID controlled applications is mainly due to the past record of success, the wide availability, and the simplicity in use of this technique. In practice, control design is still often achieved by tedious manual tuning or by heuristic PID tuning rules [4]. More advanced tuning concepts are most frequently developed for Single-Input-Single-Output (SISO) systems [5], [6]. For Multi-Input-Multi-Output (MIMO) systems, popular tuning methods, such as biggest log-modulus and the dominant pole placement tuning method [7], strive to tune each control loop individually, followed by a collective de-tuning to stabilize the multi-loop system. These tuning methods, however, rely on linear process models and require stable processes. For general PID control structures where multiple controllers act on each input, controller design is usually conducted by decoupling the process, subsequently allowing the design of individual SISO PIDs. One example are online adjusted precompensators, which decouple the process transfer function matrix [8].

We present a Bayesian model selection approach to estimate the intrinsic dimensionality of a high-dimensional dataset. To this end, we introduce a novel formulation of the probabilisitic principal component analysis model based on a normal-gamma prior distribution. In this context, we exhibit a closed-form expression of the marginal likelihood which allows to infer an optimal number of components. We also propose a heuristic based on the expected shape of the marginal likelihood curve in order to choose the hyperparameters. In non-asymptotic frameworks, we show on simulated data that this exact dimensionality selection approach is competitive with both Bayesian and frequentist state-of-the-art methods.

This paper is a tutorial on Formal Concept Analysis (FCA) and its applications. FCA is an applied branch of Lattice Theory, a mathematical discipline which enables formalisation of concepts as basic units of human thinking and analysing data in the object-attribute form. Originated in early 80s, during the last three decades, it became a popular human-centred tool for knowledge representation and data analysis with numerous applications. Since the tutorial was specially prepared for RuS-SIR 2014, the covered FCA topics include Information Retrieval with a focus on visualisation aspects, Machine Learning, Data Mining and Knowledge Discovery, Text Mining and several others.

The growth of data, the need for scalability and the complexity of models used in modern machine learning calls for distributed implementations. Yet, as of today, distributed machine learning frameworks have largely ignored the possibility of arbitrary (i.e., Byzantine) failures. In this paper, we study the robustness to Byzantine failures at the fundamental level of stochastic gradient descent (SGD), the heart of most machine learning algorithms. Assuming a set of $n$ workers, up to $f$ of them being Byzantine, we ask how robust can SGD be, without limiting the dimension, nor the size of the parameter space. We first show that no gradient descent update rule based on a linear combination of the vectors proposed by the workers (i.e, current approaches) tolerates a single Byzantine failure. We then formulate a resilience property of the update rule capturing the basic requirements to guarantee convergence despite $f$ Byzantine workers. We finally propose Krum, an update rule that satisfies the resilience property aforementioned. For a $d$-dimensional learning problem, the time complexity of Krum is $O(n^2 \cdot (d + \log n))$.

Greedy algorithms are widely used for problems in machine learning such as feature selection and set function optimization. Unfortunately, for large datasets, the running time of even greedy algorithms can be quite high. This is because for each greedy step we need to refit a model or calculate a function using the previously selected choices and the new candidate. Two algorithms that are faster approximations to the greedy forward selection were introduced recently ([Mirzasoleiman et al. 2013, 2015]). They achieve better performance by exploiting distributed computation and stochastic evaluation respectively. Both algorithms have provable performance guarantees for submodular functions. In this paper we show that divergent from previously held opinion, submodularity is not required to obtain approximation guarantees for these two algorithms. Specifically, we show that a generalized concept of weak submodularity suffices to give multiplicative approximation guarantees. Our result extends the applicability of these algorithms to a larger class of functions. Furthermore, we show that a bounded submodularity ratio can be used to provide data dependent bounds that can sometimes be tighter also for submodular functions. We empirically validate our work by showing superior performance of fast greedy approximations versus several established baselines on artificial and real datasets.

We provide new approximation guarantees for greedy low rank matrix estimation under standard assumptions of restricted strong convexity and smoothness. Our novel analysis also uncovers previously unknown connections between the low rank estimation and combinatorial optimization, so much so that our bounds are reminiscent of corresponding approximation bounds in submodular maximization. Additionally, we also provide statistical recovery guarantees. Finally, we present empirical comparison of greedy estimation with established baselines on two important real-world problems.