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Seeded Graph Matching

arXiv.org Machine Learning

Given two graphs, the graph matching problem is to align the two vertex sets so as to minimize the number of adjacency disagreements between the two graphs. The seeded graph matching problem is the graph matching problem when we are first given a partial alignment that we are tasked with completing. In this paper, we modify the state-of-the-art approximate graph matching algorithm "FAQ" of Vogelstein et al. (2015) to make it a fast approximate seeded graph matching algorithm, adapt its applicability to include graphs with differently sized vertex sets, and extend the algorithm so as to provide, for each individual vertex, a nomination list of likely matches. We demonstrate the effectiveness of our algorithm via simulation and real data experiments; indeed, knowledge of even a few seeds can be extremely effective when our seeded graph matching algorithm is used to recover a naturally existing alignment that is only partially observed.


Maximum Entropy Flow Networks

arXiv.org Machine Learning

Maximum entropy modeling is a flexible and popular framework for formulating statistical models given partial knowledge. In this paper, rather than the traditional method of optimizing over the continuous density directly, we learn a smooth and invertible transformation that maps a simple distribution to the desired maximum entropy distribution. Doing so is nontrivial in that the objective being maximized (entropy) is a function of the density itself. By exploiting recent developments in normalizing flow networks, we cast the maximum entropy problem into a finite-dimensional constrained optimization, and solve the problem by combining stochastic optimization with the augmented Lagrangian method. Simulation results demonstrate the effectiveness of our method, and applications to finance and computer vision show the flexibility and accuracy of using maximum entropy flow networks.


From First-Order Logic to Assertional Logic

arXiv.org Artificial Intelligence

First-Order Logic (FOL) is widely regarded as one of the most important foundations for knowledge representation. Nevertheless, in this paper, we argue that FOL has several critical issues for this purpose. Instead, we propose an alternative called assertional logic, in which all syntactic objects are categorized as set theoretic constructs including individuals, concepts and operators, and all kinds of knowledge are formalized by equality assertions. We first present a primitive form of assertional logic that uses minimal assumed knowledge and constructs. Then, we show how to extend it by definitions, which are special kinds of knowledge, i.e., assertions. We argue that assertional logic, although simpler, is more expressive and extensible than FOL. As a case study, we show how assertional logic can be used to unify logic and probability, and more building blocks in AI.


Tensor clustering with algebraic constraints gives interpretable groups of crosstalk mechanisms in breast cancer

arXiv.org Machine Learning

We introduce a tensor-based clustering method to extract sparse, low-dimensional structure from high-dimensional, multi-indexed datasets. Specifically, this framework is designed to enable detection of clusters of data in the presence of structural requirements which we encode as algebraic constraints in a linear program. We illustrate our method on a collection of experiments measuring the response of genetically diverse breast cancer cell lines to an array of ligands. Each experiment consists of a cell line-ligand combination, and contains time-course measurements of the early-signalling kinases MAPK and AKT at two different ligand dose levels. By imposing appropriate structural constraints and respecting the multi-indexed structure of the data, our clustering analysis can be optimized for biological interpretation and therapeutic understanding. We then perform a systematic, large-scale exploration of mechanistic models of MAPK-AKT crosstalk for each cluster. This analysis allows us to quantify the heterogeneity of breast cancer cell subtypes, and leads to hypotheses about the mechanisms by which cell lines respond to ligands. Our clustering method is general and can be tailored to a variety of applications in science and industry.


Axiomatizing Category Theory in Free Logic

arXiv.org Artificial Intelligence

Starting from a generalization of the standard axioms for a monoid we present a stepwise development of various, mutually equivalent foundational axiom systems for category theory. Our axiom sets have been formalized in the Isabelle/HOL interactive proof assistant, and this formalization utilizes a semantically correct embedding of free logic in classical higher-order logic. The modeling and formal analysis of our axiom sets has been significantly supported by series of experiments with automated reasoning tools integrated with Isabelle/HOL. We also address the relation of our axiom systems to alternative proposals from the literature, including an axiom set proposed by Freyd and Scedrov for which we reveal a technical issue (when encoded in free logic where free variables range over defined and undefined objects): either all operations, e.g. morphism composition, are total or their axiom system is inconsistent. The repair for this problem is quite straightforward, however.


Generative Modeling with Conditional Autoencoders: Building an Integrated Cell

arXiv.org Machine Learning

We present a conditional generative model to learn variation in cell and nuclear morphology and the location of subcellular structures from microscopy images. Our model generalizes to a wide range of subcellular localization and allows for a probabilistic interpretation of cell and nuclear morphology and structure localization from fluorescence images. We demonstrate the effectiveness of our approach by producing photo-realistic cell images using our generative model. The conditional nature of the model provides the ability to predict the localization of unobserved structures given cell and nuclear morphology.


Interesting read: How Much Will AI Decrease The Need For Human Labor?

#artificialintelligence

As we have explained on multiple occasions, AI has and will have an impact on many industries. Of course, with this development, the question that all the people working in those industries is the same: "what will happen to my job?" Have you ever ask yourself this question: How will AI affect the demand for human Labor. Do you think AI will decrease human labor? So if foreseeable technologies materialize, then then the need for human labor could decrease. Technology always puts existing jobs under strain.


AI Aids Medical Tricorder's Arrival -- 250 Years Early

#artificialintelligence

Since I'm told that some of you may be unfamiliar with "Star Trek" lore, the tricorder was (will be?) a two-piece mobile medical diagnostic tool used by Dr. Leonard "Bones" McCoy, ship's surgeon of the United Star Ship (USS) Enterprise (NCC-1701), in "Star Trek: TOS" (The Original Series), which debuted on Sept. 8, 1966. The two pieces of the tool included a roughly two-inch-long cylinder that looked a lot like a salt shaker (it was), and a rectangular box with a screen. Its use usually precipitated Dr. McCoy's declaration of, "I'm a doctor, not a bricklayer," or something similar. In 2012, the Qualcomm Foundation decided to put up a $10 million purse to sponsor an Xprize contest to develop such a device. According to contest rules, the winning entry had to had to weigh no more than five pounds, diagnose at least 16 different conditions based on analysis of five vital signs, and be usable by anybody, without the help of a medical professional.


Do we understand the impact of artificial intelligence on employment? Bruegel

#artificialintelligence

In my previous blog on artificial intelligence (AI), I dealt with the general characteristics of AI and machine learning. Thanks to complex virtual learning techniques, machines are now able to perform a wide range of physical and cognitive tasks. And the efficiency and accuracy of their work is expected to increase as AI systems advance through machine learning, big data and increased computational power. The benefits are clear, but there are also concerns for the future of human work and employment. If indeed machines continue to improve their performance beyond human levels, a natural question to ask is whether machines will put humans' jobs at risk and reduce employment.


The Morning After: Thursday, April 27th 2017

Engadget

We also hear more on the next Call Of Duty title and Amazon's new fashion camera. Profits are up, and'Pokemon' is pretty much a license to print money. It's claimed an operating profit of $1.6 billion (178 billion yen) for the last quarter, which is almost a billion dollars more than the same quarter in 2016. It's the company's first financial results after its Switch console went on sale, and since March 3rd, it's sold 2.74 million units. The company believes sales will stay strong, forecasting 10 million more Switch consoles sold by this time next year.