Genre
Preference Learning with Response Time: Robust Losses and Guarantees
This paper investigates the integration of response time data into human preference learning frameworks for more effective reward model elicitation. While binary preference data has become fundamental in fine-tuning foundation models, generative AI systems, and other large-scale models, the valuable temporal information inherent in user decision-making remains largely unexploited. We propose novel methodologies to incorporate response time information alongside binary choice data, leveraging the Evidence Accumulation Drift Diffusion (EZ) model, under which response time is informative of the preference strength. We develop Neyman-orthogonal loss functions that achieve oracle convergence rates for reward model learning, matching the theoretical optimal rates that would be attained if the expected response times for each query were known a priori. Our theoretical analysis demonstrates that for linear reward functions, conventional preference learning suffers from error rates that scale exponentially with reward magnitude. In contrast, our response time-augmented approach reduces this to polynomial scaling, representing a significant improvement in sample efficiency. We extend these guarantees to non-parametric reward function spaces, establishing convergence properties for more complex, realistic reward models.
EAReranker: Efficient Embedding Adequacy Assessment for Retrieval Augmented Generation
With the increasing adoption of Retrieval-Augmented Generation (RAG) systems for knowledge-intensive tasks, ensuring the adequacy of retrieved documents has become critically important for generation quality. Traditional reranking approaches face three significant challenges: substantial computational overhead that scales with document length, dependency on plain text that limits application in sensitive scenarios, and insufficient assessment of document value beyond simple relevance metrics. We propose EAReranker, an efficient embedding-based adequacy assessment framework that evaluates document utility for RAG systems without requiring access to original text content.
Adaptive Preference Arithmetic: Modeling Dynamic Preference Strengths for LLMAgent Personalization
As large language models (LLMs) are increasingly used as personalized user assistants, effectively adapting to users' evolving preferences is critical for delivering high-quality personalized responses. While user preferences are often stable in content, their relative strengths shift over time due to changing goals and contexts. Therefore, modeling these dynamic preference strengths can enable finer-grained personalization. However, current methods face two major challenges: (i) limited user feedback makes it difficult to estimate preference strengths accurately, and (ii) natural language ambiguity limits the controllability of preference-guided generation. To address these issues, we propose AdaPA-Agent, a LLM-agent personalization framework that models dynamic preference strengths via Adaptive Preference Arithmetic. First, instead of requiring additional user feedback, AdaPA-Agent employs an alignment-based strength estimation module to estimate the strength of user preferences from the existing user-agent interaction. Then, it guides controllable personalized generation by linearly combining next-token distributions, weighted by the estimated strengths of individual preferences. Experiments on two personalization tasks-conversational recommendation and personalized web interaction-demonstrate that AdaPA-Agent better aligning with users' changing intents, and has achieved over 18.9% and 14.2% improvements compared to ReAct, the widely-used agent framework.
Evaluating LLMs in Open-Source Games
Large Language Models' (LLMs) programming capabilities enable their participation in open-source games: a game-theoretic setting in which players submit computer programs in lieu of actions. These programs offer numerous advantages, including interpretability, inter-agent transparency, and formal verifiability; additionally, they enable program equilibria, solutions that leverage the transparency of code and are inaccessible within normal-form settings. We evaluate the capabilities of leading open-and closed-weight LLMs to predict and classify program strategies and evaluate features of the approximate program equilibria reached by LLM agents in dyadic and evolutionary settings. We identify the emergence of payoffmaximizing, cooperative, and deceptive strategies, characterize the adaptation of mechanisms within these programs over repeated open-source games, and analyze their comparative evolutionary fitness. We find that open-source games serve as a viable environment to study and steer the emergence of cooperative strategy in multi-agent dilemmas.
For Better or for Worse, Transformers Seek Patterns for Memorization
Memorization in language models is a critical yet poorly understood phenomenon. In this work, we investigate memorization in transformer-based language models by analyzing their memorization dynamics during training over multiple epochs. We find that memorization is neither a constant accumulation of sequences nor simply dictated by the recency of exposure to these sequences. Instead, much like generalization, memorization appears to be driven by pattern recognition. Tracking memorization dynamics in mixed datasets, we observe that models memorize different sub-datasets in distinct bursts, suggesting that each subset is associated with unique underlying patterns, and that the model prefers to learn these patterns in a consistent order. We also find that easily learnable patterns tend to support generalization on unseen data, while more complex patterns do not. Furthermore, in datasets with weak or absent patterns, larger models may delay memorization relative to smaller ones, a behavior we term overthinking. Our results show that the subset of sequences memorized by a model over time is not arbitrary, and give insights into the internal processes a model goes through during training.
LLMInterpretability with Identifiable Temporal-Instantaneous Representation
Despite Large Language Models' remarkable capabilities, understanding their internal representations remains challenging. Mechanistic interpretability tools such as sparse autoencoders (SAEs) were developed to extract interpretable features from LLMs but lack temporal dependency modeling, instantaneous relation representation, and more importantly theoretical guarantees--undermining both the theoretical foundations and the practical confidence necessary for subsequent analyses. While causal representation learning (CRL) offers theoretically-grounded approaches for uncovering latent concepts, existing methods cannot scale to LLMs' rich conceptual space due to inefficient computation. To bridge the gap, we introduce an identifiable temporal causal representation learning framework specifically designed for LLMs' high-dimensional concept space, capturing both time-delayed and instantaneous causal relations. Our approach provides theoretical guarantees and demonstrates efficacy on synthetic datasets scaled to match real-world complexity. By extending SAE techniques with our temporal causal framework, we successfully discover meaningful concept relationships in LLM activations. Our findings show that modeling both temporal and instantaneous conceptual relationships advances the interpretability of LLMs.
Non-monotone Submodular Optimization: p-Matchoid Constraints and Fully Dynamic Setting
Submodular maximization subject to a p-matchoid constraint has various applications in machine learning, particularly in tasks such as feature selection, video and text summarization, movie recommendation, graph-based learning, and constraintbased optimization. We study this problem in the dynamic setting, where a sequence of insertions and deletions of elements to a p-matchoid M(V,I) occurs over time and the goal is to efficiently maintain an approximate solution. We propose a dynamic algorithm for non-monotone submodular maximization under a p-matchoid constraint. For a p-matchoid M(V,I) of rank k, defined by a collection of m matroids, our algorithm guarantees a (2p +2 p p(p +1) +1 +ฯต)-approximate solution at any time t in the update sequence, with an expected amortized query complexity of O(ฯต 3 pk4 log2(k)) per update.
Reasoning Models Better Express Their Confidence
Despite their strengths, large language models (LLMs) often fail to communicate their confidence accurately, making it difficult to assess when they might be wrong and limiting their reliability. In this work, we demonstrate that reasoning models that engage in extended chain-of-thought (CoT) reasoning exhibit superior performance not only in problem-solving but also in accurately expressing their confidence. Specifically, we benchmark six reasoning models across six datasets and find that they achieve strictly better confidence calibration than their non-reasoning counterparts in 33 out of the 36 settings. Our detailed analysis reveals that these gains in calibration stem from the slow thinking behaviors of reasoning models (e.g., exploring alternative approaches and backtracking) which enable them to adjust their confidence dynamically throughout their CoT, making it progressively more accurate. In particular, we find that reasoning models become increasingly better calibrated as their CoT unfolds, a trend not observed in non-reasoning models. Moreover, removing slow thinking behaviors from the CoT leads to a significant drop in calibration. Lastly, we show that non-reasoning models also demonstrate enhanced calibration when simply guided to slow think via in-context learning, fully isolating slow thinking as the source of the calibration gains.2
Cross-fluctuation phase transitions reveal sampling dynamics in diffusion models
We analyse how the sampling dynamics of distributions evolve in score-based diffusion models using cross-fluctuations, a centered-moment statistic from statistical physics. Specifically, we show that starting from an unbiased isotropic normal distribution, samples undergo sharp, discrete transitions, eventually forming distinct events of a desired distribution while progressively revealing finer structure. As this process is reversible, these transitions also occur in reverse, where intermediate states progressively merge, tracing a path back to the initial distribution. We demonstrate that these transitions can be detected as discontinuities in nth-order cross-fluctuations. For variance-preserving SDEs, we derive a closed-form for these cross-fluctuations that is efficiently computable for the reverse trajectory. We find that detecting these transitions directly boosts sampling efficiency, accelerates class-conditional and rare-class generation, and improves two zero-shot tasks-image classification and style transfer-without expensive grid search or retraining. We also show that this viewpoint unifies classical coupling and mixing from finite Markov chains with continuous dynamics while extending to stochastic SDEs and non Markovian samplers.
TABULA: ATabular Self-Supervised Foundation Model for Single-Cell Transcriptomics Jiayuan Ding
Foundation models (FMs) have shown great promise in single-cell genomics, yet current approaches, such as scGPT, Geneformer, and scFoundation, rely on centralized training and language modeling objectives that overlook the tabular nature of single-cell data and raise significant privacy concerns. We present TABULA, a foundation model designed for single-cell transcriptomics, which integrates a novel tabular modeling objective and federated learning framework to enable privacy-preserving pretraining across decentralized datasets.