Goto

Collaborating Authors

 Genre




Inferring stochastic dynamics with growth from cross-sectional data Suryanarayana Maddu School of Mathematics and Statistics, Center for Computational Biology, University of Melbourne

Neural Information Processing Systems

Time-resolved single-cell omics data offers high-throughput, genome-wide measurements of cellular states, which are instrumental to reverse-engineer the processes underpinning cell fate. Such technologies are inherently destructive, allowing only cross-sectional measurements of the underlying stochastic dynamical system. Furthermore, cells may divide or die in addition to changing their molecular state. Collectively these present a major challenge to inferring realistic biophysical models. We present a novel approach, unbalanced probability flow inference, that addresses this challenge for biological processes modelled as stochastic dynamics with growth. By leveraging a Lagrangian formulation of the Fokker-Planck equation, our method accurately disentangles drift from intrinsic noise and growth.


Pan-LUT: Efficient Pan-sharpening via Learnable Look-Up Tables

Neural Information Processing Systems

Recently, deep learning-based pan-sharpening algorithms have achieved notable advancements over traditional methods. However, deep learning-based methods incur substantial computational overhead during inference, especially with large images. This excessive computational demand limits the applicability of these methods in real-world scenarios, particularly in the absence of dedicated computing devices such as GPUs and TPUs. To address these challenges, we propose Pan-LUT, a novel learnable look-up table (LUT) framework for pan-sharpening that strikes a balance between performance and computational efficiency for large remote sensing images. Our method makes it possible to process 15K 15K remote sensing images on a 24GBGPU. To finely control the spectral transformation, we devise the PAN-guided look-up table (PGLUT) for channel-wise spectral mapping. To effectively capture fine-grained spatial details, we introduce the spatial details look-up table (SDLUT).


FAPEX: Fractional Amplitude-Phase Expressor for Robust Cross-Subject Seizure Prediction

Neural Information Processing Systems

Precise, generalizable subject-agnostic seizure prediction (SASP) remains a fundamental challenge due to the intrinsic complexity and significant spectral variability of electrophysiologial signals across individuals and recording modalities. We propose FAPEX, a novel architecture that introduces a learnable fractional neural frame operator (FrNFO) for adaptive time-frequency decomposition. Unlike conventional models that exhibit spectral bias toward low frequencies, our FrNFO employs fractional-order convolutions to capture both high and low-frequency dynamics, achieving approximately 10% improvement in F1-score and sensitivity over state-of-the-art baselines. The FrNFO enables the extraction of instantaneous phase and amplitude representations that are particularly informative for preictal biomarker discovery and enhance out-of-distribution generalization. FAPEXfurther integrates structural state-space modeling and channelwise attention, allowing it to handle heterogeneous electrode montages.


Inverse Optimization Latent Variable Models for Learning Costs Applied to Route Problems

Neural Information Processing Systems

Learning representations for solutions of constrained optimization problems (COPs) with unknown cost functions is challenging, as models like (Variational) Autoencoders struggle to enforce constraints when decoding structured outputs. We propose an Inverse Optimization Latent Variable Model (IO-LVM) that learns a latent space of COP cost functions from observed solutions and reconstructs feasible outputs by solving a COP with a solver in the loop. Our approach leverages estimated gradients of a Fenchel-Young loss through a non-differentiable deterministic solver to shape the latent space. Unlike standard Inverse Optimization or Inverse Reinforcement Learning methods, which typically recover a single or context-specific cost function, IO-LVM captures a distribution over cost functions, enabling the identification of diverse solution behaviors arising from different agents or conditions not available during the training process. We validate our method on real-world datasets of ship and taxi routes, as well as paths in synthetic graphs, demonstrating its ability to reconstruct paths and cycles, predict their distributions, and yield interpretable latent representations.


Robust Hallucination Detection in LLMs via Adaptive Token Selection

Neural Information Processing Systems

Hallucinations in large language models (LLMs) pose significant safety concerns that impede their broader deployment. Recent research in hallucination detection has demonstrated that LLMs' internal representations contain truthfulness hints, which can be harnessed for detector training. However, the performance of these detectors is heavily dependent on the internal representations of predetermined tokens, fluctuating considerably when working on free-form generations with varying lengths and sparse distributions of hallucinated entities. To address this, we propose HaMI, a novel approach that enables robust detection of hallucinations through adaptive selection and learning of critical tokens that are most indicative of hallucinations. We achieve this robustness by an innovative formulation of the Hallucination detection task as Multiple Instance (HaMI) learning over tokenlevel representations within a sequence, thereby facilitating a joint optimisation of token selection and hallucination detection on generation sequences of diverse forms. Comprehensive experimental results on four hallucination benchmarks show that HaMI significantly outperforms existing state-of-the-art approaches. Code is available at https://github.com/mala-lab/HaMI.


SuffixDecoding: Extreme Speculative Decoding for Emerging AIApplications

Neural Information Processing Systems

Speculative decoding is widely adopted to reduce latency in large language model (LLM) inference by leveraging smaller draft models capable of handling diverse user tasks. However, emerging AI applications, such as LLM-based agents, present unique workload characteristics: instead of diverse independent requests, agentic frameworks typically submit repetitive inference requests, such as multi-agent pipelines performing similar subtasks or self-refinement loops iteratively enhancing outputs. These workloads result in long and highly predictable sequences, which current speculative decoding methods do not effectively exploit. To address this gap, we introduce SuffixDecoding, a novel method that utilizes efficient suffix trees to cache long token sequences from prompts and previous outputs. By adaptively speculating more tokens when acceptance likelihood is high and fewer when it is low, SuffixDecoding effectively exploits opportunities for longer speculations while conserving computation when those opportunities are limited. Evaluations on agentic benchmarks, including SWE-Bench and Text-to-SQL, demonstrate that SuffixDecoding achieves speedups of up to 5.3, outperforming state-of-the-art methods--2.8 faster than model-based approaches like EAGLE-2/3 and 1.9 faster than model-free approaches such as Token Recycling.


Wavy Transformer

Neural Information Processing Systems

Transformers have achieved remarkable success across natural language processing (NLP) and computer vision (CV). However, deep transformer models often suffer from an over-smoothing issue, in which token representations converge to similar values as they pass through successive transformer blocks. In this paper, we establish an equivalence between the hidden-state dynamics induced by stacked attention layers and graph neural diffusion on a complete graph. From this perspective, over-smoothing can be interpreted as a consequence of the dissipative nature of the underlying diffusion dynamics. Motivated by this physical interpretation, we propose Wavy Transformer, which consists of a novel attention layer based on second-order wavy dynamics. We also introduce a feedforward network and a normalization layer designed to preserve the physical state-velocity relationship under the chain rule, thereby extending the transformer architecture. We further validate our proposed techniques on various transformer models for NLP, CV, and sparse-graph tasks. The results consistently demonstrate that Wavy Transformer improves performance with minimal additional parameters and no extra hyperparameter tuning.


Bi-Level Knowledge Transfer for Multi-Task Multi-Agent Reinforcement Learning

Neural Information Processing Systems

Multi-Agent Reinforcement Learning (MARL) has achieved remarkable success in various real-world scenarios, but its high cost of online training makes it impractical to learn each task from scratch. To enable effective policy reuse, we consider the problem of zero-shot generalization from offline data across multiple tasks. While prior work focuses on transferring individual skills of agents, we argue that the effective policy transfer across tasks should also capture the team-level coordination knowledge. In this paper, we propose Bi-Level Knowledge Transfer (BiKT) for Multi-Task MARL, which performs knowledge transfer at both the individual and team levels. At the individual level, we extract transferable individual skill embeddings from offline MARL trajectories.