Despite the remarkable results of deep learning in breast cancer histopathology image classification, challenges such as data imbalance and interpretability still exist and require cross-domain knowledge and collaboration among medical experts. This study proposes a breast cancer classification method using a dual-activated lightweight attention ResNet50 model, effectively addressing data imbalance and interpretability challenges. The model fuses a pre-trained deep ResNet50 and a lightweight attention mechanism to accomplish classification by embedding an attention module in layer 4 of ResNet50 and adding two fully connected layers. The fully connected network design employs LeakyReLU and ReLU activation functions. The model outperforms SEResNet50, DensNet121, VGG16, VGG16Inception, ViT, Swin- Transformer, Dinov2_Vitb14, and ResNet50 models regarding precision, accuracy, recall, F1 score, and GMean, especially in the application performance on the BreakHis dataset. In particular, the model demonstrates significant robustness and broad applicability when dealing with the unbalanced breast cancer dataset. The model has been evaluated on histopathology images at magnification factors of 40X, 100X, 200X, and 400X, achieving accuracies of 98.5%, 98.7%, 97.9%, and 94.3%, respectively. The study comprehensively assessed the model's performance. In the later stages of training, the validated losses and accuracies change minimally, showing that the model avoids overfitting and exhibits good generalization ability. This model exhibited the fastest convergence in all laboratory experiments, even though its parameters are not the smallest. This highlights the model's efficacy as a lightweight attention framework, showcasing its efficiency in achieving rapid convergence without compromising performance.

In this paper, we consider federated reinforcement learning for tabular episodic Markov Decision Processes (MDP) where, under the coordination of a central server, multiple agents collaboratively explore the environment and learn an optimal policy without sharing their raw data. While linear speedup in the number of agents has been achieved for some metrics, such as convergence rate and sample complexity, in similar settings, it is unclear whether it is possible to design a model-free algorithm to achieve linear regret speedup with low communication cost. We propose two federated Q-Learning algorithms termed as FedQ-Hoeffding and FedQ-Bernstein, respectively, and show that the corresponding total regrets achieve a linear speedup compared with their single-agent counterparts when the time horizon is sufficiently large, while the communication cost scales logarithmically in the total number of time steps $T$. Those results rely on an event-triggered synchronization mechanism between the agents and the server, a novel step size selection when the server aggregates the local estimates of the state-action values to form the global estimates, and a set of new concentration inequalities to bound the sum of non-martingale differences. This is the first work showing that linear regret speedup and logarithmic communication cost can be achieved by model-free algorithms in federated reinforcement learning.

Dynamic Mode Decomposition (DMD) is a popular data-driven analysis technique used to decompose complex, nonlinear systems into a set of modes, revealing underlying patterns and dynamics through spectral analysis. This review presents a comprehensive and pedagogical examination of DMD, emphasizing the role of Koopman operators in transforming complex nonlinear dynamics into a linear framework. A distinctive feature of this review is its focus on the relationship between DMD and the spectral properties of Koopman operators, with particular emphasis on the theory and practice of DMD algorithms for spectral computations. We explore the diverse "multiverse" of DMD methods, categorized into three main areas: linear regression-based methods, Galerkin approximations, and structure-preserving techniques. Each category is studied for its unique contributions and challenges, providing a detailed overview of significant algorithms and their applications as outlined in Table 1. We include a MATLAB package with examples and applications to enhance the practical understanding of these methods. This review serves as both a practical guide and a theoretical reference for various DMD methods, accessible to both experts and newcomers, and enabling readers to delve into their areas of interest in the expansive field of DMD.

Hybrid algorithms, which combine black-box machine learning methods with experience from traditional numerical methods and domain expertise from diverse application areas, are progressively gaining importance in scientific machine learning and various industrial domains, especially in computational science and engineering. In the present survey, several promising avenues of research will be examined which focus on the combination of machine learning (ML) and domain decomposition methods (DDMs). The aim of this survey is to provide an overview of existing work within this field and to structure it into domain decomposition for machine learning and machine learning-enhanced domain decomposition, including: domain decomposition for classical machine learning, domain decomposition to accelerate the training of physics-aware neural networks, machine learning to enhance the convergence properties or computational efficiency of DDMs, and machine learning as a discretization method in a DDM for the solution of PDEs. In each of these fields, we summarize existing work and key advances within a common framework and, finally, disuss ongoing challenges and opportunities for future research.

Generative artificial intelligence (AI) refers to algorithms that create synthetic but realistic output. Diffusion models currently offer state of the art performance in generative AI for images. They also form a key component in more general tools, including text-to-image generators and large language models. Diffusion models work by adding noise to the available training data and then learning how to reverse the process. The reverse operation may then be applied to new random data in order to produce new outputs. We provide a brief introduction to diffusion models for applied mathematicians and statisticians. Our key aims are (a) to present illustrative computational examples, (b) to give a careful derivation of the underlying mathematical formulas involved, and (c) to draw a connection with partial differential equation (PDE) diffusion models. We provide code for the computational experiments. We hope that this topic will be of interest to advanced undergraduate students and postgraduate students. Portions of the material may also provide useful motivational examples for those who teach courses in stochastic processes, inference, machine learning, PDEs or scientific computing.

Recommender systems have become an essential component of many online platforms, providing personalized recommendations to users. A crucial aspect is embedding techniques that coverts the high-dimensional discrete features, such as user and item IDs, into low-dimensional continuous vectors and can enhance the recommendation performance. Applying embedding techniques captures complex entity relationships and has spurred substantial research. In this survey, we provide an overview of the recent literature on embedding techniques in recommender systems. This survey covers embedding methods like collaborative filtering, self-supervised learning, and graph-based techniques. Collaborative filtering generates embeddings capturing user-item preferences, excelling in sparse data. Self-supervised methods leverage contrastive or generative learning for various tasks. Graph-based techniques like node2vec exploit complex relationships in network-rich environments. Addressing the scalability challenges inherent to embedding methods, our survey delves into innovative directions within the field of recommendation systems. These directions aim to enhance performance and reduce computational complexity, paving the way for improved recommender systems. Among these innovative approaches, we will introduce Auto Machine Learning (AutoML), hash techniques, and quantization techniques in this survey. We discuss various architectures and techniques and highlight the challenges and future directions in these aspects. This survey aims to provide a comprehensive overview of the state-of-the-art in this rapidly evolving field and serve as a useful resource for researchers and practitioners working in the area of recommender systems.

The past decade has witnessed the rapid development of ML and DL methodologies in agricultural systems, showcased by great successes in variety of agricultural applications. However, these conventional ML/DL models have certain limitations: They heavily rely on large, costly-to-acquire labeled datasets for training, require specialized expertise for development and maintenance, and are mostly tailored for specific tasks, thus lacking generalizability. Recently, foundation models have demonstrated remarkable successes in language and vision tasks across various domains. These models are trained on a vast amount of data from multiple domains and modalities. Once trained, they can accomplish versatile tasks with just minor fine-tuning and minimal task-specific labeled data. Despite their proven effectiveness and huge potential, there has been little exploration of applying FMs to agriculture fields. Therefore, this study aims to explore the potential of FMs in the field of smart agriculture. In particular, we present conceptual tools and technical background to facilitate the understanding of the problem space and uncover new research directions in this field. To this end, we first review recent FMs in the general computer science domain and categorize them into four categories: language FMs, vision FMs, multimodal FMs, and reinforcement learning FMs. Subsequently, we outline the process of developing agriculture FMs and discuss their potential applications in smart agriculture. We also discuss the unique challenges associated with developing AFMs, including model training, validation, and deployment. Through this study, we contribute to the advancement of AI in agriculture by introducing AFMs as a promising paradigm that can significantly mitigate the reliance on extensive labeled datasets and enhance the efficiency, effectiveness, and generalization of agricultural AI systems.

The complex nature of big biological systems pushed some scientists to classify its understanding under the inconceivable missions. Different leveled challenges complicated this task, one of is the prediction of a protein's function. In recent years, significant progress has been made in this field through the development of various machine learning approaches. However, most existing methods formulate the task as a multi-classification problem, i.e assigning predefined labels to proteins. In this work, we propose a novel approach, \textbf{Prot2Text}, which predicts a protein function's in a free text style, moving beyond the conventional binary or categorical classifications. By combining Graph Neural Networks(GNNs) and Large Language Models(LLMs), in an encoder-decoder framework, our model effectively integrates diverse data types including proteins' sequences, structures, and textual annotations. This multimodal approach allows for a holistic representation of proteins' functions, enabling the generation of detailed and accurate descriptions. To evaluate our model, we extracted a multimodal protein dataset from SwissProt, and demonstrate empirically the effectiveness of Prot2Text. These results highlight the transformative impact of multimodal models, specifically the fusion of GNNs and LLMs, empowering researchers with powerful tools for more accurate prediction of proteins' functions. The code, the models and a demo will be publicly released.

The use of NLP in the realm of financial technology is broad and complex, with applications ranging from sentiment analysis and named entity recognition to question answering. Large Language Models (LLMs) have been shown to be effective on a variety of tasks; however, no LLM specialized for the financial domain has been reported in literature. In this work, we present BloombergGPT, a 50 billion parameter language model that is trained on a wide range of financial data. We construct a 363 billion token dataset based on Bloomberg's extensive data sources, perhaps the largest domain-specific dataset yet, augmented with 345 billion tokens from general purpose datasets. We validate BloombergGPT on standard LLM benchmarks, open financial benchmarks, and a suite of internal benchmarks that most accurately reflect our intended usage. Our mixed dataset training leads to a model that outperforms existing models on financial tasks by significant margins without sacrificing performance on general LLM benchmarks. Additionally, we explain our modeling choices, training process, and evaluation methodology. We release Training Chronicles (Appendix C) detailing our experience in training BloombergGPT.

The digitization of healthcare has facilitated the sharing and re-using of medical data but has also raised concerns about confidentiality and privacy. HIPAA (Health Insurance Portability and Accountability Act) mandates removing re-identifying information before the dissemination of medical records. Thus, effective and efficient solutions for de-identifying medical data, especially those in free-text forms, are highly needed. While various computer-assisted de-identification methods, including both rule-based and learning-based, have been developed and used in prior practice, such solutions still lack generalizability or need to be fine-tuned according to different scenarios, significantly imposing restrictions in wider use. The advancement of large language models (LLM), such as ChatGPT and GPT-4, have shown great potential in processing text data in the medical domain with zero-shot in-context learning, especially in the task of privacy protection, as these models can identify confidential information by their powerful named entity recognition (NER) capability. In this work, we developed a novel GPT4-enabled de-identification framework (``DeID-GPT") to automatically identify and remove the identifying information. Compared to existing commonly used medical text data de-identification methods, our developed DeID-GPT showed the highest accuracy and remarkable reliability in masking private information from the unstructured medical text while preserving the original structure and meaning of the text. This study is one of the earliest to utilize ChatGPT and GPT-4 for medical text data processing and de-identification, which provides insights for further research and solution development on the use of LLMs such as ChatGPT/GPT-4 in healthcare. Codes and benchmarking data information are available at https://github.com/yhydhx/ChatGPT-API.