Overview
scRDiT: Generating single-cell RNA-seq data by diffusion transformers and accelerating sampling
Dong, Shengze, Cui, Zhuorui, Liu, Ding, Lei, Jinzhi
Motivation: Single-cell RNA sequencing (scRNA-seq) is a groundbreaking technology extensively utilized in biological research, facilitating the examination of gene expression at the individual cell level within a given tissue sample. While numerous tools have been developed for scRNA-seq data analysis, the challenge persists in capturing the distinct features of such data and replicating virtual datasets that share analogous statistical properties. Results: Our study introduces a generative approach termed scRNA-seq Diffusion Transformer (scRDiT). This method generates virtual scRNA-seq data by leveraging a real dataset. The method is a neural network constructed based on Denoising Diffusion Probabilistic Models (DDPMs) and Diffusion Transformers (DiTs). This involves subjecting Gaussian noises to the real dataset through iterative noise-adding steps and ultimately restoring the noises to form scRNA-seq samples. This scheme allows us to learn data features from actual scRNA-seq samples during model training. Our experiments, conducted on two distinct scRNA-seq datasets, demonstrate superior performance. Additionally, the model sampling process is expedited by incorporating Denoising Diffusion Implicit Models (DDIM). scRDiT presents a unified methodology empowering users to train neural network models with their unique scRNA-seq datasets, enabling the generation of numerous high-quality scRNA-seq samples. Availability and implementation: https://github.com/DongShengze/scRDiT
Intelligence and Motion Models of Continuum Robots: an Overview
Shamilyan, Oxana, Kabin, Ievgen, Dyka, Zoya, Sudakov, Oleksandr, Cherninskyi, Andrii, Brzozowski, Marcin, Langendoerfer, Peter
Many technical solutions are bio-inspired. Octopus-inspired robotic arms belong to continuum robots which are used in minimally invasive surgery or for technical system restoration in areas difficult-toaccess. Continuum robot missions are bounded with their motions, whereby the motion of the robots is controlled by humans via wireless communication. In case of a lost connection, robot autonomy is required. Distributed control and distributed decision-making mechanisms based on artificial intelligence approaches can be a promising solution to achieve autonomy of technical systems and to increase their resilience. However these methods are not well investigated yet. Octopuses are the living example of natural distributed intelligence but their learning and decision-making mechanisms are also not fully investigated and understood yet. Our major interest is investigating mechanisms of Distributed Artificial Intelligence as a basis for improving resilience of complex systems. We decided to use a physical continuum robot prototype that is able to perform some basic movements for our research. The idea is to research how a technical system can be empowered to combine movements into sequences of motions by itself. For the experimental investigations a suitable physical prototype has to be selected, its motion control has to be implemented and automated. In this paper, we give an overview combining different fields of research, such as Distributed Artificial Intelligence and continuum robots based on 98 publications. We provide a detailed description of the basic motion control models of continuum robots based on the literature reviewed, discuss different aspects of autonomy and give an overview of physical prototypes of continuum robots.
Towards Autonomous Driving with Small-Scale Cars: A Survey of Recent Development
Li, Dianzhao, Auerbach, Paul, Okhrin, Ostap
While engaging with the unfolding revolution in autonomous driving, a challenge presents itself, how can we effectively raise awareness within society about this transformative trend? While full-scale autonomous driving vehicles often come with a hefty price tag, the emergence of small-scale car platforms offers a compelling alternative. These platforms not only serve as valuable educational tools for the broader public and young generations but also function as robust research platforms, contributing significantly to the ongoing advancements in autonomous driving technology. This survey outlines various small-scale car platforms, categorizing them and detailing the research advancements accomplished through their usage. The conclusion provides proposals for promising future directions in the field.
Forecasting the Future with Future Technologies: Advancements in Large Meteorological Models
Shu, Hailong, Wang, Yue, Song, Weiwei, Guo, Huichuang, Song, Zhen
The field of meteorological forecasting has undergone a significant transformation with the integration of large models, especially those employing deep learning techniques. This paper reviews the advancements and applications of these models in weather prediction, emphasizing their role in transforming traditional forecasting methods. Models like FourCastNet, Pangu-Weather, GraphCast, ClimaX, and FengWu have made notable contributions by providing accurate, high-resolution forecasts, surpassing the capabilities of traditional Numerical Weather Prediction (NWP) models. These models utilize advanced neural network architectures, such as Convolutional Neural Networks (CNNs), Graph Neural Networks (GNNs), and Transformers, to process diverse meteorological data, enhancing predictive accuracy across various time scales and spatial resolutions. The paper addresses challenges in this domain, including data acquisition and computational demands, and explores future opportunities for model optimization and hardware advancements. It underscores the integration of artificial intelligence with conventional meteorological techniques, promising improved weather prediction accuracy and a significant contribution to addressing climate-related challenges. This synergy positions large models as pivotal in the evolving landscape of meteorological forecasting.
SurveyAgent: A Conversational System for Personalized and Efficient Research Survey
Wang, Xintao, Chen, Jiangjie, Li, Nianqi, Chen, Lida, Yuan, Xinfeng, Shi, Wei, Ge, Xuyang, Xu, Rui, Xiao, Yanghua
In the rapidly advancing research fields such as AI, managing and staying abreast of the latest scientific literature has become a significant challenge for researchers. Although previous efforts have leveraged AI to assist with literature searches, paper recommendations, and question-answering, a comprehensive support system that addresses the holistic needs of researchers has been lacking. This paper introduces SurveyAgent, a novel conversational system designed to provide personalized and efficient research survey assistance to researchers. SurveyAgent integrates three key modules: Knowledge Management for organizing papers, Recommendation for discovering relevant literature, and Query Answering for engaging with content on a deeper level. This system stands out by offering a unified platform that supports researchers through various stages of their literature review process, facilitated by a conversational interface that prioritizes user interaction and personalization. Our evaluation demonstrates SurveyAgent's effectiveness in streamlining research activities, showcasing its capability to facilitate how researchers interact with scientific literature.
Advancements in Radiomics and Artificial Intelligence for Thyroid Cancer Diagnosis
Yousefi, Milad, Maleki, Shadi Farabi, Jafarizadeh, Ali, Youshanlui, Mahya Ahmadpour, Jafari, Aida, Pedrammehr, Siamak, Alizadehsani, Roohallah, Tadeusiewicz, Ryszard, Plawiak, Pawel
Thyroid cancer is an increasing global health concern that requires advanced diagnostic methods. The application of AI and radiomics to thyroid cancer diagnosis is examined in this review. A review of multiple databases was conducted in compliance with PRISMA guidelines until October 2023. A combination of keywords led to the discovery of an English academic publication on thyroid cancer and related subjects. 267 papers were returned from the original search after 109 duplicates were removed. Relevant studies were selected according to predetermined criteria after 124 articles were eliminated based on an examination of their abstract and title. After the comprehensive analysis, an additional six studies were excluded. Among the 28 included studies, radiomics analysis, which incorporates ultrasound (US) images, demonstrated its effectiveness in diagnosing thyroid cancer. Various results were noted, some of the studies presenting new strategies that outperformed the status quo. The literature has emphasized various challenges faced by AI models, including interpretability issues, dataset constraints, and operator dependence. The synthesized findings of the 28 included studies mentioned the need for standardization efforts and prospective multicenter studies to address these concerns. Furthermore, approaches to overcome these obstacles were identified, such as advances in explainable AI technology and personalized medicine techniques. The review focuses on how AI and radiomics could transform the diagnosis and treatment of thyroid cancer. Despite challenges, future research on multidisciplinary cooperation, clinical applicability validation, and algorithm improvement holds the potential to improve patient outcomes and diagnostic precision in the treatment of thyroid cancer.
SafetyPrompts: a Systematic Review of Open Datasets for Evaluating and Improving Large Language Model Safety
Röttger, Paul, Pernisi, Fabio, Vidgen, Bertie, Hovy, Dirk
The last two years have seen a rapid growth in concerns around the safety of large language models (LLMs). Researchers and practitioners have met these concerns by introducing an abundance of new datasets for evaluating and improving LLM safety. However, much of this work has happened in parallel, and with very different goals in mind, ranging from the mitigation of near-term risks around bias and toxic content generation to the assessment of longer-term catastrophic risk potential. This makes it difficult for researchers and practitioners to find the most relevant datasets for a given use case, and to identify gaps in dataset coverage that future work may fill. To remedy these issues, we conduct a first systematic review of open datasets for evaluating and improving LLM safety. We review 102 datasets, which we identified through an iterative and community-driven process over the course of several months. We highlight patterns and trends, such as a a trend towards fully synthetic datasets, as well as gaps in dataset coverage, such as a clear lack of non-English datasets. We also examine how LLM safety datasets are used in practice -- in LLM release publications and popular LLM benchmarks -- finding that current evaluation practices are highly idiosyncratic and make use of only a small fraction of available datasets. Our contributions are based on SafetyPrompts.com, a living catalogue of open datasets for LLM safety, which we commit to updating continuously as the field of LLM safety develops.
AEGIS: Online Adaptive AI Content Safety Moderation with Ensemble of LLM Experts
Ghosh, Shaona, Varshney, Prasoon, Galinkin, Erick, Parisien, Christopher
As Large Language Models (LLMs) and generative AI become more widespread, the content safety risks associated with their use also increase. We find a notable deficiency in high-quality content safety datasets and benchmarks that comprehensively cover a wide range of critical safety areas. To address this, we define a broad content safety risk taxonomy, comprising 13 critical risk and 9 sparse risk categories. Additionally, we curate AEGISSAFETYDATASET, a new dataset of approximately 26, 000 human-LLM interaction instances, complete with human annotations adhering to the taxonomy. We plan to release this dataset to the community to further research and to help benchmark LLM models for safety. To demonstrate the effectiveness of the dataset, we instruction-tune multiple LLM-based safety models. We show that our models (named AEGISSAFETYEXPERTS), not only surpass or perform competitively with the state-of-the-art LLM-based safety models and general purpose LLMs, but also exhibit robustness across multiple jail-break attack categories. We also show how using AEGISSAFETYDATASET during the LLM alignment phase does not negatively impact the performance of the aligned models on MT Bench scores. Furthermore, we propose AEGIS, a novel application of a no-regret online adaptation framework with strong theoretical guarantees, to perform content moderation with an ensemble of LLM content safety experts in deployment
Data Readiness for AI: A 360-Degree Survey
Hiniduma, Kaveen, Byna, Suren, Bez, Jean Luca
Data are the critical fuel for Artificial Intelligence (AI) models. Poor quality data produces inaccurate and ineffective AI models that may lead to incorrect or unsafe use. Checking for data readiness is a crucial step in improving data quality. Numerous R&D efforts have been spent on improving data quality. However, standardized metrics for evaluating data readiness for use in AI training are still evolving. In this study, we perform a comprehensive survey of metrics used for verifying AI's data readiness. This survey examines more than 120 papers that are published by ACM Digital Library, IEEE Xplore, other reputable journals, and articles published on the web by prominent AI experts. This survey aims to propose a taxonomy of data readiness for AI (DRAI) metrics for structured and unstructured datasets. We anticipate that this taxonomy can lead to new standards for DRAI metrics that would be used for enhancing the quality and accuracy of AI training and inference.
Supervised Gradual Machine Learning for Aspect Category Detection
Aspect Category Detection (ACD) aims to identify implicit and explicit aspects in a given review sentence. The state-of-the-art approaches for ACD use Deep Neural Networks (DNNs) to address the problem as a multi-label classification task. However, learning category-specific representations heavily rely on the amount of labeled examples, which may not readily available in real-world scenarios. In this paper, we propose a novel approach to tackle the ACD task by combining DNNs with Gradual Machine Learning (GML) in a supervised setting. we aim to leverage the strength of DNN in semantic relation modeling, which can facilitate effective knowledge transfer between labeled and unlabeled instances during the gradual inference of GML. To achieve this, we first analyze the learned latent space of the DNN to model the relations, i.e., similar or opposite, between instances. We then represent these relations as binary features in a factor graph to efficiently convey knowledge. Finally, we conduct a comparative study of our proposed solution on real benchmark datasets and demonstrate that the GML approach, in collaboration with DNNs for feature extraction, consistently outperforms pure DNN solutions.