Prompt recovery in large language models (LLMs) is crucial for understanding how LLMs work and addressing concerns regarding privacy, copyright, etc. The trend towards inference-only APIs complicates this task by restricting access to essential outputs for recovery. To tackle this challenge, we extract prompt-related information from limited outputs and identify a strong(negative) correlation between output probability-based uncertainty and the success of prompt recovery. This finding led to the development of Deliberative PrOmpt RecoverY (DORY), our novel approach that leverages uncertainty to recover prompts accurately. DORY involves reconstructing drafts from outputs, refining these with hints, and filtering out noise based on uncertainty. Our evaluation across diverse LLMs and prompt benchmarks shows that DORY outperforms existing baselines, improving performance by approximately 10.82% and establishing a new state-of-the-art record in prompt recovery tasks. Significantly, DORY operates using a single LLM without any external resources or model, offering a cost-effective, user-friendly prompt recovery solution.

In the present article, we propose a paradigm shift on evolving Artificial Neural Networks (ANNs) towards a new bio-inspired design that is grounded on the structural properties, interactions, and dynamics of protein networks (PNs): the Artificial Protein Network (APN). This introduces several advantages previously unrealized by state-of-the-art approaches in NE: (1) We can draw inspiration from how nature, thanks to millions of years of evolution, efficiently encodes protein interactions in the DNA to translate our APN to silicon DNA. This helps bridge the gap between syntax and semantics observed in current NE approaches.

A timeline provides a total ordering of events and times, and is useful for a number of natural language understanding tasks. However, qualitative temporal graphs that can be derived directly from text -- such as TimeML annotations -- usually explicitly reveal only partial orderings of events and times. In this work, we apply prior work on solving point algebra problems to the task of extracting timelines from TimeML annotated texts, and develop an exact, end-to-end solution which we call TLEX (TimeLine EXtraction). TLEX transforms TimeML annotations into a collection of timelines arranged in a trunk-and-branch structure. Like what has been done in prior work, TLEX checks the consistency of the temporal graph and solves it; however, it adds two novel functionalities. First, it identifies specific relations involved in an inconsistency (which could then be manually corrected) and, second, TLEX performs a novel identification of sections of the timelines that have indeterminate order, information critical for downstream tasks such as aligning events from different timelines. We provide detailed descriptions and analysis of the algorithmic components in TLEX, and conduct experimental evaluations by applying TLEX to 385 TimeML annotated texts from four corpora. We show that 123 of the texts are inconsistent, 181 of them have more than one ``real world'' or main timeline, and there are 2,541 indeterminate sections across all four corpora. A sampling evaluation showed that TLEX is 98--100% accurate with 95% confidence along five dimensions: the ordering of time-points, the number of main timelines, the placement of time-points on main versus subordinate timelines, the connecting point of branch timelines, and the location of the indeterminate sections. We provide a reference implementation of TLEX, the extracted timelines for all texts, and the manual corrections of the inconsistent texts.

FDA Medical Device recalls are critical and time-sensitive events, requiring swift identification of impacted devices to inform the public of a recall event and ensure patient safety. The OpenFDA device recall dataset contains valuable information about ongoing device recall actions, but manually extracting relevant device information from the recall action summaries is a time-consuming task. Named Entity Recognition (NER) is a task in Natural Language Processing (NLP) that involves identifying and categorizing named entities in unstructured text. Existing NER models, including domain-specific models like BioBERT, struggle to correctly identify medical device trade names, part numbers and component terms within these summaries. To address this, we propose DeviceBERT, a medical device annotation, pre-processing and enrichment pipeline, which builds on BioBERT to identify and label medical device terminology in the device recall summaries with improved accuracy. Furthermore, we demonstrate that our approach can be applied effectively for performing entity recognition tasks where training data is limited or sparse.

The ability of Generative AI (GAI) technology to automatically check, synthesize and modify software engineering artifacts promises to revolutionize all aspects of software engineering. Using GAI for software engineering tasks is consequently one of the most rapidly expanding fields of software engineering research, with dozens of LLM-based code models having been published since 2021. However, the overwhelming majority of existing code models share a major weakness - they are exclusively trained on the syntactic facet of software, significantly lowering their trustworthiness in tasks dependent on software semantics. To address this problem, a new class of "Morescient" GAI is needed that is "aware" of (i.e., trained on) both the semantic and static facets of software. This, in turn, will require a new generation of software observation platforms capable of generating ultra-large quantities of execution observations in a structured and readily analyzable way. In this paper, we present a vision for how such "Morescient" GAI models can be engineered, evolved and disseminated according to the principles of open science.

Large language models (LLMs) exhibit emerging geospatial capabilities, stemming from their pre-training on vast unlabelled text datasets that are often derived from the Common Crawl corpus. However, the geospatial content within CC remains largely unexplored, impacting our understanding of LLMs' spatial reasoning. This paper investigates the prevalence of geospatial data in recent Common Crawl releases using Gemini, a powerful language model. By analyzing a sample of documents and manually revising the results, we estimate that between 1 in 5 and 1 in 6 documents contain geospatial information such as coordinates and street addresses. Our findings provide quantitative insights into the nature and extent of geospatial data within Common Crawl, and web crawl data in general. Furthermore, we formulate questions to guide future investigations into the geospatial content of available web crawl datasets and its influence on LLMs.

Today's distributed and pervasive computing addresses large-scale cyber-physical ecosystems, characterised by dense and large networks of devices capable of computation, communication and interaction with the environment and people. While most research focusses on treating these systems as "composites" (i.e., heterogeneous functional complexes), recent developments in fields such as self-organising systems and swarm robotics have opened up a complementary perspective: treating systems as "collectives" (i.e., uniform, collaborative, and self-organising groups of entities). This article explores the motivations, state of the art, and implications of this "collective computing paradigm" in software engineering, discusses its peculiar challenges, and outlines a path for future research, touching on aspects such as macroprogramming, collective intelligence, self-adaptive middleware, learning, synthesis, and experimentation of collective behaviour.

This paper explores the concept formation and alignment within the realm of language models (LMs). We propose a mechanism for identifying concepts and their hierarchical organization within the semantic representations learned by various LMs, encompassing a spectrum from early models like Glove to the transformer-based language models like ALBERT and T5. Our approach leverages the inherent structure present in the semantic embeddings generated by these models to extract a taxonomy of concepts and their hierarchical relationships. This investigation sheds light on how LMs develop conceptual understanding and opens doors to further research to improve their ability to reason and leverage real-world knowledge. We further conducted experiments and observed the possibility of isolating these extracted conceptual representations from the reasoning modules of the transformer-based LMs. The observed concept formation along with the isolation of conceptual representations from the reasoning modules can enable targeted token engineering to open the door for potential applications in knowledge transfer, explainable AI, and the development of more modular and conceptually grounded language models.

Using feature attributions for post-hoc explanations is a common practice to understand and verify the predictions of opaque machine learning models. Despite the numerous techniques available, individual methods often produce inconsistent and unstable results, putting their overall reliability into question. In this work, we aim to systematically improve the quality of feature attributions by combining multiple explanations across distinct methods or their variations. For this purpose, we propose a novel approach to derive optimal convex combinations of feature attributions that yield provable improvements of desired quality criteria such as robustness or faithfulness to the model behavior. Through extensive experiments involving various model architectures and popular feature attribution techniques, we demonstrate that our combination strategy consistently outperforms individual methods and existing baselines.

Pseudocode in a scholarly paper provides a concise way to express the algorithms implemented therein. Pseudocode can also be thought of as an intermediary representation that helps bridge the gap between programming languages and natural languages. Having access to a large collection of pseudocode can provide various benefits ranging from enhancing algorithmic understanding, facilitating further algorithmic design, to empowering NLP or computer vision based models for tasks such as automated code generation and optical character recognition (OCR). We have created a large pseudocode collection by extracting nearly 320,000 pseudocode examples from arXiv papers. This process involved scanning over $2.2$ million scholarly papers, with 1,000 of them being manually inspected and labeled. Our approach encompasses an extraction mechanism tailored to optimize the coverage and a validation mechanism based on random sampling to check its accuracy and reliability, given the inherent heterogeneity of the collection. In addition, we offer insights into common pseudocode structures, supported by clustering and statistical analyses. Notably, these analyses indicate an exponential-like growth in the usage of pseudocodes, highlighting their increasing significance.