In many scientific fields, large language models (LLMs) have revolutionized the way with which text and other modalities of data (e.g., molecules and proteins) are dealt, achieving superior performance in various applications and augmenting the scientific discovery process. Nevertheless, previous surveys on scientific LLMs often concentrate on one to two fields or a single modality. In this paper, we aim to provide a more holistic view of the research landscape by unveiling cross-field and cross-modal connections between scientific LLMs regarding their architectures and pre-training techniques. To this end, we comprehensively survey over 250 scientific LLMs, discuss their commonalities and differences, as well as summarize pre-training datasets and evaluation tasks for each field and modality. Moreover, we investigate how LLMs have been deployed to benefit scientific discovery. Resources related to this survey are available at https://github.com/yuzhimanhua/Awesome-Scientific-Language-Models.

Artificial intelligence (AI) as a disruptive technology is not new. However, its recent evolution, engineered by technological transformation, big data analytics, and quantum computing, produces conversational and generative AI (CGAI/GenAI) and human-like chatbots that disrupt conventional operations and methods in different fields. This study investigates the scientific landscape of CGAI and human-chatbot interaction/collaboration and evaluates use cases, benefits, challenges, and policy implications for multidisciplinary education and allied industry operations. The publications trend showed that just 4% (n=75) occurred during 2006-2018, while 2019-2023 experienced astronomical growth (n=1763 or 96%). The prominent use cases of CGAI (e.g., ChatGPT) for teaching, learning, and research activities occurred in computer science [multidisciplinary and AI] (32%), medical/healthcare (17%), engineering (7%), and business fields (6%). The intellectual structure shows strong collaboration among eminent multidisciplinary sources in business, Information Systems, and other areas. The thematic structure of SLP highlights prominent CGAI use cases, including improved user experience in human-computer interaction, computer programs/code generation, and systems creation. Widespread CGAI usefulness for teachers, researchers, and learners includes syllabi/course content generation, testing aids, and academic writing. The concerns about abuse and misuse (plagiarism, academic integrity, privacy violations) and issues about misinformation, danger of self-diagnoses, and patient privacy in medical/healthcare applications are prominent. Formulating strategies and policies to address potential CGAI challenges in teaching/learning and practice are priorities. Developing discipline-based automatic detection of GenAI contents to check abuse is proposed.

Graph Neural Networks (GNNs) have significantly advanced various downstream graph-relevant tasks, encompassing recommender systems, molecular structure prediction, social media analysis, etc. Despite the boosts of GNN, recent research has empirically demonstrated its potential vulnerability to backdoor attacks, wherein adversaries employ triggers to poison input samples, inducing GNN to adversary-premeditated malicious outputs. This is typically due to the controlled training process, or the deployment of untrusted models, such as delegating model training to third-party service, leveraging external training sets, and employing pre-trained models from online sources. Although there's an ongoing increase in research on GNN backdoors, comprehensive investigation into this field is lacking. To bridge this gap, we propose the first survey dedicated to GNN backdoors. We begin by outlining the fundamental definition of GNN, followed by the detailed summarization and categorization of current GNN backdoor attacks and defenses based on their technical characteristics and application scenarios. Subsequently, the analysis of the applicability and use cases of GNN backdoors is undertaken. Finally, the exploration of potential research directions of GNN backdoors is presented. This survey aims to explore the principles of graph backdoors, provide insights to defenders, and promote future security research.

Multilingual Large Language Models (LLMs) have gained large popularity among Natural Language Processing (NLP) researchers and practitioners. These models, trained on huge datasets, show proficiency across various languages and demonstrate effectiveness in numerous downstream tasks. This paper navigates the landscape of multilingual LLMs, providing an introductory overview of their technical aspects. It explains underlying architectures, objective functions, pre-training data sources, and tokenization methods. This work explores the unique features of different model types: encoder-only (mBERT, XLM-R), decoder-only (XGLM, PALM, BLOOM, GPT-3), and encoder-decoder models (mT5, mBART). Additionally, it addresses one of the significant limitations of multilingual LLMs - the curse of multilinguality - and discusses current attempts to overcome it.

Generative AI is rapidly transforming medical imaging and text analysis, offering immense potential for enhanced diagnosis and personalized care. However, this transformative technology raises crucial ethical, societal, and legal questions. This paper delves into these complexities, examining issues of accuracy, informed consent, data privacy, and algorithmic limitations in the context of generative AI's application to medical imaging and text. We explore the legal landscape surrounding liability and accountability, emphasizing the need for robust regulatory frameworks. Furthermore, we dissect the algorithmic challenges, including data biases, model limitations, and workflow integration. By critically analyzing these challenges and proposing responsible solutions, we aim to foster a roadmap for ethical and responsible implementation of generative AI in healthcare, ensuring its transformative potential serves humanity with utmost care and precision.

Satellite remote sensing missions have gained popularity over the past fifteen years due to their ability to cover large swaths of land at regular intervals, making them ideal for monitoring environmental trends. The FINCH mission, a 3U+ CubeSat equipped with a hyperspectral camera, aims to monitor crop residue cover in agricultural fields. Although hyperspectral imaging captures both spectral and spatial information, it is prone to various types of noise, including random noise, stripe noise, and dead pixels. Effective denoising of these images is crucial for downstream scientific tasks. Traditional methods, including hand-crafted techniques encoding strong priors, learned 2D image denoising methods applied across different hyperspectral bands, or diffusion generative models applied independently on bands, often struggle with varying noise strengths across spectral bands, leading to significant spectral distortion. This paper presents a novel approach to hyperspectral image denoising using latent diffusion models that integrate spatial and spectral information. We particularly do so by building a 3D diffusion model and presenting a 3-stage training approach on real and synthetically crafted datasets. The proposed method preserves image structure while reducing noise. Evaluations on both popular hyperspectral denoising datasets and synthetically crafted datasets for the FINCH mission demonstrate the effectiveness of this approach.

Technology-driven precision livestock farming (PLF) empowers practitioners to monitor and analyze animal growth and health conditions for improved productivity and welfare. Computer vision (CV) is indispensable in PLF by using cameras and computer algorithms to supplement or supersede manual efforts for livestock data acquisition. Data availability is crucial for developing innovative monitoring and analysis systems through artificial intelligence-based techniques. However, data curation processes are tedious, time-consuming, and resource intensive. This study presents the first systematic survey of publicly available livestock CV datasets (https://github.com/Anil-Bhujel/Public-Computer-Vision-Dataset-A-Systematic-Survey). Among 58 public datasets identified and analyzed, encompassing different species of livestock, almost half of them are for cattle, followed by swine, poultry, and other animals. Individual animal detection and color imaging are the dominant application and imaging modality for livestock. The characteristics and baseline applications of the datasets are discussed, emphasizing the implications for animal welfare advocates. Challenges and opportunities are also discussed to inspire further efforts in developing livestock CV datasets. This study highlights that the limited quantity of high-quality annotated datasets collected from diverse environments, animals, and applications, the absence of contextual metadata, are a real bottleneck in PLF.

Contradiction retrieval refers to identifying and extracting documents that explicitly disagree with or refute the content of a query, which is important to many downstream applications like fact checking and data cleaning. To retrieve contradiction argument to the query from large document corpora, existing methods such as similarity search and crossencoder models exhibit significant limitations. The former struggles to capture the essence of contradiction due to its inherent nature of favoring similarity, while the latter suffers from computational inefficiency, especially when the size of corpora is large. To address these challenges, we introduce a novel approach: SparseCL that leverages specially trained sentence embeddings designed to preserve subtle, contradictory nuances between sentences. Our method utilizes a combined metric of cosine similarity and a sparsity function to efficiently identify and retrieve documents that contradict a given query. This approach dramatically enhances the speed of contradiction detection by reducing the need for exhaustive document comparisons to simple vector calculations. We validate our model using the Arguana dataset, a benchmark dataset specifically geared towards contradiction retrieval, as well as synthetic contradictions generated from the MSMARCO and HotpotQA datasets using GPT-4. Our experiments demonstrate the efficacy of our approach not only in contradiction retrieval with more than 30% accuracy improvements on MSMARCO and HotpotQA across different model architectures but also in applications such as cleaning corrupted corpora to restore high-quality QA retrieval. This paper outlines a promising direction for improving the accuracy and efficiency of contradiction retrieval in large-scale text corpora.

Recent advances in large language models (LLMs) have unlocked novel opportunities for machine learning applications in the financial domain. These models have demonstrated remarkable capabilities in understanding context, processing vast amounts of data, and generating human-preferred contents. In this survey, we explore the application of LLMs on various financial tasks, focusing on their potential to transform traditional practices and drive innovation. We provide a discussion of the progress and advantages of LLMs in financial contexts, analyzing their advanced technologies as well as prospective capabilities in contextual understanding, transfer learning flexibility, complex emotion detection, etc. We then highlight this survey for categorizing the existing literature into key application areas, including linguistic tasks, sentiment analysis, financial time series, financial reasoning, agent-based modeling, and other applications. For each application area, we delve into specific methodologies, such as textual analysis, knowledge-based analysis, forecasting, data augmentation, planning, decision support, and simulations. Furthermore, a comprehensive collection of datasets, model assets, and useful codes associated with mainstream applications are presented as resources for the researchers and practitioners. Finally, we outline the challenges and opportunities for future research, particularly emphasizing a number of distinctive aspects in this field. We hope our work can help facilitate the adoption and further development of LLMs in the financial sector.

Foundation models (FMs) are large-scale deep-learning models trained on extensive datasets using self-supervised techniques. These models serve as a base for various downstream tasks, including healthcare. FMs have been adopted with great success across various domains within healthcare, including natural language processing (NLP), computer vision, graph learning, biology, and omics. Existing healthcare-based surveys have not yet included all of these domains. Therefore, this survey provides a comprehensive overview of FMs in healthcare. We focus on the history, learning strategies, flagship models, applications, and challenges of FMs. We explore how FMs such as the BERT and GPT families are reshaping various healthcare domains, including clinical large language models, medical image analysis, and omics data. Furthermore, we provide a detailed taxonomy of healthcare applications facilitated by FMs, such as clinical NLP, medical computer vision, graph learning, and other biology-related tasks. Despite the promising opportunities FMs provide, they also have several associated challenges, which are explained in detail. We also outline potential future directions to provide researchers and practitioners with insights into the potential and limitations of FMs in healthcare to advance their deployment and mitigate associated risks.