Parkinson's disease (PD), the second most prevalent neurodegenerative disorder worldwide, frequently presents with early-stage speech impairments. Recent advancements in Artificial Intelligence (AI), particularly deep learning (DL), have significantly enhanced PD diagnosis through the analysis of speech data. Nevertheless, the progress of research is restricted by the limited availability of publicly accessible speech-based PD datasets, primarily due to privacy concerns. The goal of this systematic review is to explore the current landscape of speech-based DL approaches for PD classification, based on 33 scientific works published between January 2020 and March 2024. We discuss their available resources, capabilities, and potential limitations, and issues related to bias, explainability, and privacy. Furthermore, this review provides an overview of publicly accessible speech-based datasets and open-source material for PD. The DL approaches identified are categorized into end-to-end (E2E) learning, transfer learning (TL), and deep acoustic feature extraction (DAFE). Among E2E approaches, Convolutional Neural Networks (CNNs) are prevalent, though Transformers are increasingly popular. E2E approaches face challenges such as limited data and computational resources, especially with Transformers. TL addresses these issues by providing more robust PD diagnosis and better generalizability across languages. DAFE aims to improve the explainability and interpretability of results by examining the specific effects of deep features on both other DL approaches and more traditional machine learning (ML) methods. However, it often underperforms compared to E2E and TL approaches.

In the field of biomedical natural language processing, medical concept normalization is a crucial task for accurately mapping mentions of concepts to a large knowledge base. However, this task becomes even more challenging in low-resource settings, where limited data and resources are available. In this thesis, I explore the challenges of medical concept normalization in a low-resource setting. Specifically, I investigate the shortcomings of current medical concept normalization methods applied to German lay texts. Since there is no suitable dataset available, a dataset consisting of posts from a German medical online forum is annotated with concepts from the Unified Medical Language System. The experiments demonstrate that multilingual Transformer-based models are able to outperform string similarity methods. The use of contextual information to improve the normalization of lay mentions is also examined, but led to inferior results. Based on the results of the best performing model, I present a systematic error analysis and lay out potential improvements to mitigate frequent errors.

A force field as accurate as quantum mechanics (QM) and as fast as molecular mechanics (MM), with which one can simulate a biomolecular system efficiently enough and meaningfully enough to get quantitative insights, is among the most ardent dreams of biophysicists -- a dream, nevertheless, not to be fulfilled any time soon. Machine learning force fields (MLFFs) represent a meaningful endeavor towards this direction, where differentiable neural functions are parametrized to fit ab initio energies, and furthermore forces through automatic differentiation. We argue that, as of now, the utility of the MLFF models is no longer bottlenecked by accuracy but primarily by their speed (as well as stability and generalizability), as many recent variants, on limited chemical spaces, have long surpassed the chemical accuracy of $1$ kcal/mol -- the empirical threshold beyond which realistic chemical predictions are possible -- though still magnitudes slower than MM. Hoping to kindle explorations and designs of faster, albeit perhaps slightly less accurate MLFFs, in this review, we focus our attention on the design space (the speed-accuracy tradeoff) between MM and ML force fields. After a brief review of the building blocks of force fields of either kind, we discuss the desired properties and challenges now faced by the force field development community, survey the efforts to make MM force fields more accurate and ML force fields faster, envision what the next generation of MLFF might look like.

Modern diffusion models, particularly those utilizing a Transformer-based UNet for denoising, rely heavily on self-attention operations to manage complex spatial relationships, thus achieving impressive generation performance. However, this existing paradigm faces significant challenges in generating high-resolution visual content due to its quadratic time and memory complexity with respect to the number of spatial tokens. To address this limitation, we aim at a novel linear attention mechanism as an alternative in this paper. Specifically, we begin our exploration from recently introduced models with linear complexity, e.g., Mamba2, RWKV6, Gated Linear Attention, etc, and identify two key features-attention normalization and non-causal inference-that enhance high-resolution visual generation performance. Building on these insights, we introduce a generalized linear attention paradigm, which serves as a low-rank approximation of a wide spectrum of popular linear token mixers. To save the training cost and better leverage pre-trained models, we initialize our models and distill the knowledge from pre-trained StableDiffusion (SD). We find that the distilled model, termed LinFusion, achieves performance on par with or superior to the original SD after only modest training, while significantly reducing time and memory complexity. Extensive experiments on SD-v1.5, SD-v2.1, and SD-XL demonstrate that LinFusion delivers satisfactory zero-shot cross-resolution generation performance, generating high-resolution images like 16K resolution. Moreover, it is highly compatible with pre-trained SD components, such as ControlNet and IP-Adapter, requiring no adaptation efforts. Codes are available at https://github.com/Huage001/LinFusion.

As blockchain technology rapidly evolves, the demand for enhanced efficiency, security, and scalability grows.Transformer models, as powerful deep learning architectures,have shown unprecedented potential in addressing various blockchain challenges. However, a systematic review of Transformer applications in blockchain is lacking. This paper aims to fill this research gap by surveying over 200 relevant papers, comprehensively reviewing practical cases and research progress of Transformers in blockchain applications. Our survey covers key areas including anomaly detection, smart contract security analysis, cryptocurrency prediction and trend analysis, and code summary generation. To clearly articulate the advancements of Transformers across various blockchain domains, we adopt a domain-oriented classification system, organizing and introducing representative methods based on major challenges in current blockchain research. For each research domain,we first introduce its background and objectives, then review previous representative methods and analyze their limitations,and finally introduce the advancements brought by Transformer models. Furthermore, we explore the challenges of utilizing Transformer, such as data privacy, model complexity, and real-time processing requirements. Finally, this article proposes future research directions, emphasizing the importance of exploring the Transformer architecture in depth to adapt it to specific blockchain applications, and discusses its potential role in promoting the development of blockchain technology. This review aims to provide new perspectives and a research foundation for the integrated development of blockchain technology and machine learning, supporting further innovation and application expansion of blockchain technology.

What is it to interpret the outputs of an opaque machine learning model. One approach is to develop interpretable machine learning techniques. These techniques aim to show how machine learning models function by providing either model centric local or global explanations, which can be based on mechanistic interpretations revealing the inner working mechanisms of models or nonmechanistic approximations showing input feature output data relationships. In this paper, we draw on social philosophy to argue that interpreting machine learning outputs in certain normatively salient domains could require appealing to a third type of explanation that we call sociostructural explanation. The relevance of this explanation type is motivated by the fact that machine learning models are not isolated entities but are embedded within and shaped by social structures. Sociostructural explanations aim to illustrate how social structures contribute to and partially explain the outputs of machine learning models. We demonstrate the importance of sociostructural explanations by examining a racially biased healthcare allocation algorithm. Our proposal highlights the need for transparency beyond model interpretability, understanding the outputs of machine learning systems could require a broader analysis that extends beyond the understanding of the machine learning model itself.

Large Language Models (LLMs) have emerged as powerful tools for natural language processing tasks, revolutionizing the field with their ability to understand and generate human-like text. In this paper, we present a comprehensive survey of the several research efforts that have been presented for the acceleration of transformer networks for Large Language Models using hardware accelerators. The survey presents the frameworks that have been proposed and then performs a qualitative and quantitative comparison regarding the technology, the processing platform (FPGA, ASIC, In-Memory, GPU), the speedup, the energy efficiency, the performance (GOPs), and the energy efficiency (GOPs/W) of each framework. The main challenge in comparison is that every proposed scheme is implemented on a different process technology making hard a fair comparison. The main contribution of this paper is that we extrapolate the results of the performance and the energy efficiency on the same technology to make a fair comparison; one theoretical and one more practical. We implement part of the LLMs on several FPGA chips to extrapolate the results to the same process technology and then we make a fair comparison of the performance.

Model merging is an efficient empowerment technique in the machine learning community that does not require the collection of raw training data and does not require expensive computation. As model merging becomes increasingly prevalent across various fields, it is crucial to understand the available model merging techniques comprehensively. However, there is a significant gap in the literature regarding a systematic and thorough review of these techniques. This survey provides a comprehensive overview of model merging methods and theories, their applications in various domains and settings, and future research directions. Specifically, we first propose a new taxonomic approach that exhaustively discusses existing model merging methods. Secondly, we discuss the application of model merging techniques in large language models, multimodal large language models, and 10+ machine learning subfields, including continual learning, multi-task learning, few-shot learning, etc. Finally, we highlight the remaining challenges of model merging and discuss future research directions. A comprehensive list of papers about model merging is available at \url{https://github.com/EnnengYang/Awesome-Model-Merging-Methods-Theories-Applications}.

This book uses the modern theory of artificial intelligence (AI) to understand human suffering or mental pain. Both humans and sophisticated AI agents process information about the world in order to achieve goals and obtain rewards, which is why AI can be used as a model of the human brain and mind. This book intends to make the theory accessible to a relatively general audience, requiring only some relevant scientific background. The book starts with the assumption that suffering is mainly caused by frustration. Frustration means the failure of an agent (whether AI or human) to achieve a goal or a reward it wanted or expected. Frustration is inevitable because of the overwhelming complexity of the world, limited computational resources, and scarcity of good data. In particular, such limitations imply that an agent acting in the real world must cope with uncontrollability, unpredictability, and uncertainty, which all lead to frustration. Fundamental in such modelling is the idea of learning, or adaptation to the environment. While AI uses machine learning, humans and animals adapt by a combination of evolutionary mechanisms and ordinary learning. Even frustration is fundamentally an error signal that the system uses for learning. This book explores various aspects and limitations of learning algorithms and their implications regarding suffering. At the end of the book, the computational theory is used to derive various interventions or training methods that will reduce suffering in humans. The amount of frustration is expressed by a simple equation which indicates how it can be reduced. The ensuing interventions are very similar to those proposed by Buddhist and Stoic philosophy, and include mindfulness meditation. Therefore, this book can be interpreted as an exposition of a computational theory justifying why such philosophies and meditation reduce human suffering.

Analyzing large datasets to select optimal features is one of the most important research areas in machine learning and data mining. This feature selection procedure involves dimensionality reduction which is crucial in enhancing the performance of the model, making it less complex. Recently, several types of attribute selection methods have been proposed that use different approaches to obtain representative subsets of the attributes. However, population-based evolutionary algorithms like Genetic Algorithms (GAs) have been proposed to provide remedies for these drawbacks by avoiding local optima and improving the selection process itself. This manuscript presents a sweeping review on GA-based feature selection techniques in applications and their effectiveness across different domains. This review was conducted using the PRISMA methodology; hence, the systematic identification, screening, and analysis of relevant literature were performed. Thus, our results hint that the field's hybrid GA methodologies including, but not limited to, GA-Wrapper feature selector and HGA-neural networks, have substantially improved their potential through the resolution of problems such as exploration of unnecessary search space, accuracy performance problems, and complexity. The conclusions of this paper would result in discussing the potential that GAs bear in feature selection and future research directions for their enhancement in applicability and performance.