Machine learning (ML) has seen exponential growth in recent years, finding applications in various domains such as finance, medicine, and cybersecurity. Malware remains a significant threat to modern computing, frequently used by attackers to compromise systems. While numerous machine learning-based approaches for malware detection achieve high performance, they often lack transparency and fail to explain their predictions. This is a critical drawback in malware analysis, where understanding the rationale behind detections is essential for security analysts to verify and disseminate information. Explainable AI (XAI) addresses this issue by maintaining high accuracy while producing models that provide clear, understandable explanations for their decisions. In this survey, we comprehensively review the current state-of-the-art ML-based malware detection techniques and popular XAI approaches. Additionally, we discuss research implementations and the challenges of explainable malware analysis. This theoretical survey serves as an entry point for researchers interested in XAI applications in malware detection. By analyzing recent advancements in explainable malware analysis, we offer a broad overview of the progress in this field, positioning our work as the first to extensively cover XAI methods for malware classification and detection.

Contraction theory is an analytical tool to study differential dynamics of a non-autonomous (i.e., time-varying) nonlinear system under a contraction metric defined with a uniformly positive definite matrix, the existence of which results in a necessary and sufficient characterization of incremental exponential stability of multiple solution trajectories with respect to each other. By using a squared differential length as a Lyapunov-like function, its nonlinear stability analysis boils down to finding a suitable contraction metric that satisfies a stability condition expressed as a linear matrix inequality, indicating that many parallels can be drawn between well-known linear systems theory and contraction theory for nonlinear systems. Furthermore, contraction theory takes advantage of a superior robustness property of exponential stability used in conjunction with the comparison lemma. This yields much-needed safety and stability guarantees for neural network-based control and estimation schemes, without resorting to a more involved method of using uniform asymptotic stability for input-to-state stability. Such distinctive features permit systematic construction of a contraction metric via convex optimization, thereby obtaining an explicit exponential bound on the distance between a time-varying target trajectory and solution trajectories perturbed externally due to disturbances and learning errors. The objective of this paper is therefore to present a tutorial overview of contraction theory and its advantages in nonlinear stability analysis of deterministic and stochastic systems, with an emphasis on deriving formal robustness and stability guarantees for various learning-based and data-driven automatic control methods. In particular, we provide a detailed review of techniques for finding contraction metrics and associated control and estimation laws using deep neural networks.

As Deep Neural Networks have achieved thrilling breakthroughs in the past decade, data augmentations have garnered increasing attention as regularization techniques when massive labeled data are unavailable. Among existing augmentations, Mixup and relevant data-mixing methods that convexly combine selected samples and the corresponding labels are widely adopted because they yield high performances by generating data-dependent virtual data while easily migrating to various domains. This survey presents a comprehensive review of foundational mixup methods and their applications. We first elaborate on the training pipeline with mixup augmentations as a unified framework containing modules. A reformulated framework could contain various mixup methods and give intuitive operational procedures. Then, we systematically investigate the applications of mixup augmentations on vision downstream tasks, various data modalities, and some analysis \& theorems of mixup. Meanwhile, we conclude the current status and limitations of mixup research and point out further work for effective and efficient mixup augmentations. This survey can provide researchers with the current state of the art in mixup methods and provide some insights and guidance roles in the mixup arena. An online project with this survey is available at \url{https://github.com/Westlake-AI/Awesome-Mixup}.

This paper describes the 2nd edition of the ICML Topological Deep Learning Challenge that was hosted within the ICML 2024 ELLIS Workshop on Geometry-grounded Representation Learning and Generative Modeling (GRaM). The challenge focused on the problem of representing data in different discrete topological domains in order to bridge the gap between Topological Deep Learning (TDL) and other types of structured datasets (e.g. point clouds, graphs). Specifically, participants were asked to design and implement topological liftings, i.e. mappings between different data structures and topological domains --like hypergraphs, or simplicial/cell/combinatorial complexes. The challenge received 52 submissions satisfying all the requirements. This paper introduces the main scope of the challenge, and summarizes the main results and findings.

In recent years, large language models (LLMs) have achieved remarkable success in natural language processing (NLP). LLMs require an extreme amount of parameters to attain high performance. As models grow into the trillion-parameter range, computational and memory costs increase significantly. This makes it difficult for many researchers to access the resources needed to train or apply these models. Optimizing LLM performance involves two main approaches: fine-tuning pre-trained models for specific tasks to achieve state-of-the-art performance, and reducing costs or improving training time while maintaining similar performance. This paper presents a systematic literature review (SLR) following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) statement. We reviewed 65 publications out of 983 from 2017 to December 2023, retrieved from 5 databases. The study presents methods to optimize and accelerate LLMs while achieving cutting-edge results without sacrificing accuracy. We begin with an overview of the development of language modeling, followed by a detailed explanation of commonly used frameworks and libraries, and a taxonomy for improving and speeding up LLMs based on three classes: LLM training, LLM inference, and system serving. We then delve into recent optimization and acceleration strategies such as training optimization, hardware optimization, scalability and reliability, accompanied by the taxonomy and categorization of these strategies. Finally, we provide an in-depth comparison of each class and strategy, with two case studies on optimizing model training and enhancing inference efficiency. These case studies showcase practical approaches to address LLM resource limitations while maintaining performance.

Reliable uncertainty estimation has become a crucial requirement for the industrial deployment of deep learning algorithms, particularly in high-risk applications such as autonomous driving and medical diagnosis. However, mainstream uncertainty estimation methods, based on deep ensembling or Bayesian neural networks, generally impose substantial computational overhead. To address this challenge, a novel paradigm called Evidential Deep Learning (EDL) has emerged, providing reliable uncertainty estimation with minimal additional computation in a single forward pass. This survey provides a comprehensive overview of the current research on EDL, designed to offer readers a broad introduction to the field without assuming prior knowledge. Specifically, we first delve into the theoretical foundation of EDL, the subjective logic theory, and discuss its distinctions from other uncertainty estimation frameworks. We further present existing theoretical advancements in EDL from four perspectives: reformulating the evidence collection process, improving uncertainty estimation via OOD samples, delving into various training strategies, and evidential regression networks. Thereafter, we elaborate on its extensive applications across various machine learning paradigms and downstream tasks. In the end, an outlook on future directions for better performances and broader adoption of EDL is provided, highlighting potential research avenues.

The classification performance of the random vector functional link (RVFL), a randomized neural network, has been widely acknowledged. However, due to its shallow learning nature, RVFL often fails to consider all the relevant information available in a dataset. Additionally, it overlooks the geometrical properties of the dataset. To address these limitations, a novel graph random vector functional link based on two-view learning (GRVFL-2V) model is proposed. The proposed model is trained on multiple views, incorporating the concept of multiview learning (MVL), and it also incorporates the geometrical properties of all the views using the graph embedding (GE) framework. The fusion of RVFL networks, MVL, and GE framework enables our proposed model to achieve the following: i) \textit{efficient learning}: by leveraging the topology of RVFL, our proposed model can efficiently capture nonlinear relationships within the multi-view data, facilitating efficient and accurate predictions; ii) \textit{comprehensive representation}: fusing information from diverse perspectives enhance the proposed model's ability to capture complex patterns and relationships within the data, thereby improving the model's overall generalization performance; and iii) \textit{structural awareness}: by employing the GE framework, our proposed model leverages the original data distribution of the dataset by naturally exploiting both intrinsic and penalty subspace learning criteria. The evaluation of the proposed GRVFL-2V model on various datasets, including 27 UCI and KEEL datasets, 50 datasets from Corel5k, and 45 datasets from AwA, demonstrates its superior performance compared to baseline models. These results highlight the enhanced generalization capabilities of the proposed GRVFL-2V model across a diverse range of datasets.

The impressive performance of ChatGPT and other foundation-model-based products in human language understanding has prompted both academia and industry to explore how these models can be tailored for specific industries and application scenarios. This process, known as the customization of domain-specific foundation models, addresses the limitations of general-purpose models, which may not fully capture the unique patterns and requirements of domain-specific data. Despite its importance, there is a notable lack of comprehensive overview papers on building domain-specific foundation models, while numerous resources exist for general-purpose models. To bridge this gap, this article provides a timely and thorough overview of the methodology for customizing domain-specific foundation models. It introduces basic concepts, outlines the general architecture, and surveys key methods for constructing domain-specific models. Furthermore, the article discusses various domains that can benefit from these specialized models and highlights the challenges ahead. Through this overview, we aim to offer valuable guidance and reference for researchers and practitioners from diverse fields to develop their own customized foundation models.

Digital pathology is revolutionizing the field of pathology by enabling the digitization, storage, and analysis of tissue samples as whole slide images (WSIs). WSIs are gigapixel files that capture the intricate details of tissue samples, providing a rich source of information for diagnostic and research purposes. However, due to their enormous size, representing these images as one compact vector is essential for many computational pathology tasks, such as search and retrieval, to ensure efficiency and scalability. Most current methods are "patch-oriented," meaning they divide WSIs into smaller patches for processing, which prevents a holistic analysis of the entire slide. Additionally, the necessity for compact representation is driven by the expensive high-performance storage required for WSIs. Not all hospitals have access to such extensive storage solutions, leading to potential disparities in healthcare quality and accessibility. This paper provides an overview of existing set-based approaches to single-vector WSI representation, highlighting the innovations that allow for more efficient and effective use of these complex images in digital pathology, thus addressing both computational challenges and storage limitations.

Knowledge graphs (KGs) have recently been used for many tools and applications, making them rich resources in structured format. However, in the real world, KGs grow due to the additions of new knowledge in the form of entities and relations, making these KGs dynamic. This chapter formally defines several types of dynamic KGs and summarizes how these KGs can be represented. Additionally, many neurosymbolic methods have been proposed for learning representations over static KGs for several tasks such as KG completion and entity alignment. This chapter further focuses on neurosymbolic methods for dynamic KGs with or without temporal information. More specifically, it provides an insight into neurosymbolic methods for dynamic (temporal or non-temporal) KG completion and entity alignment tasks. It further discusses the challenges of current approaches and provides some future directions.