Overview
Deep Learning in Single-Cell Analysis
Molho, Dylan, Ding, Jiayuan, Li, Zhaoheng, Wen, Hongzhi, Tang, Wenzhuo, Wang, Yixin, Venegas, Julian, Jin, Wei, Liu, Renming, Su, Runze, Danaher, Patrick, Yang, Robert, Lei, Yu Leo, Xie, Yuying, Tang, Jiliang
Single-cell technologies are revolutionizing the entire field of biology. The large volumes of data generated by single-cell technologies are high-dimensional, sparse, heterogeneous, and have complicated dependency structures, making analyses using conventional machine learning approaches challenging and impractical. In tackling these challenges, deep learning often demonstrates superior performance compared to traditional machine learning methods. In this work, we give a comprehensive survey on deep learning in single-cell analysis. We first introduce background on single-cell technologies and their development, as well as fundamental concepts of deep learning including the most popular deep architectures. We present an overview of the single-cell analytic pipeline pursued in research applications while noting divergences due to data sources or specific applications. We then review seven popular tasks spanning through different stages of the single-cell analysis pipeline, including multimodal integration, imputation, clustering, spatial domain identification, cell-type deconvolution, cell segmentation, and cell-type annotation. Under each task, we describe the most recent developments in classical and deep learning methods and discuss their advantages and disadvantages. Deep learning tools and benchmark datasets are also summarized for each task. Finally, we discuss the future directions and the most recent challenges. This survey will serve as a reference for biologists and computer scientists, encouraging collaborations.
The Shape of Learning Curves: a Review
Learning curves provide insight into the dependence of a learner's generalization performance on the training set size. This important tool can be used for model selection, to predict the effect of more training data, and to reduce the computational complexity of model training and hyperparameter tuning. This review recounts the origins of the term, provides a formal definition of the learning curve, and briefly covers basics such as its estimation. Our main contribution is a comprehensive overview of the literature regarding the shape of learning curves. We discuss empirical and theoretical evidence that supports well-behaved curves that often have the shape of a power law or an exponential. We consider the learning curves of Gaussian processes, the complex shapes they can display, and the factors influencing them. We draw specific attention to examples of learning curves that are ill-behaved, showing worse learning performance with more training data. To wrap up, we point out various open problems that warrant deeper empirical and theoretical investigation. All in all, our review underscores that learning curves are surprisingly diverse and no universal model can be identified.
Quantum Deep Dreaming: A Novel Approach for Quantum Circuit Design
One of the challenges currently facing the quantum computing community is the design of quantum circuits which can efficiently run on near-term quantum computers, known as the quantum compiling problem. Algorithms such as the Variational Quantum Eigensolver (VQE), Quantum Approximate Optimization Algorithm (QAOA), and Quantum Architecture Search (QAS) have been shown to generate or find optimal near-term quantum circuits. However, these methods are computationally expensive and yield little insight into the circuit design process. In this paper, we propose Quantum Deep Dreaming (QDD), an algorithm that generates optimal quantum circuit architectures for specified objectives, such as ground state preparation, while providing insight into the circuit design process. In QDD, we first train a neural network to predict some property of a quantum circuit (such as VQE energy). Then, we employ the Deep Dreaming technique on the trained network to iteratively update an initial circuit to achieve a target property value (such as ground state VQE energy). Importantly, this iterative updating allows us to analyze the intermediate circuits of the dreaming process and gain insights into the circuit features that the network is modifying during dreaming. We demonstrate that QDD successfully generates, or 'dreams', circuits of six qubits close to ground state energy (Transverse Field Ising Model VQE energy) and that dreaming analysis yields circuit design insights. QDD is designed to optimize circuits with any target property and can be applied to circuit design problems both within and outside of quantum chemistry. Hence, QDD lays the foundation for the future discovery of optimized quantum circuits and for increased interpretability of automated quantum algorithm design.
A Comprehensive Survey of Regression Based Loss Functions for Time Series Forecasting
Jadon, Aryan, Patil, Avinash, Jadon, Shruti
Time Series Forecasting has been an active area of research due to its many applications ranging from network usage prediction, resource allocation, anomaly detection, and predictive maintenance. Numerous publications published in the last five years have proposed diverse sets of objective loss functions to address cases such as biased data, long-term forecasting, multicollinear features, etc. In this paper, we have summarized 14 well-known regression loss functions commonly used for time series forecasting and listed out the circumstances where their application can aid in faster and better model convergence. We have also demonstrated how certain categories of loss functions perform well across all data sets and can be considered as a baseline objective function in circumstances where the distribution of the data is unknown. Our code is available at GitHub: https://github.com/aryan-jadon/Regression-Loss-Functions-in-Time-Series-Forecasting-Tensorflow.
Bank of England reports on AI in financial services - LoupedIn
The Bank of England has published its report "Machine Learning in UK Financial Services". The report sets out its findings, following a survey of around a hundred regulated firms in the UK. It highlights the growing use of machine learning, especially in insurance, and the challenges of explainability, legacy systems, the skills gap and regulatory uncertainty. The number of UK financial services firms using or developing machine learning (ML) applications is increasing, and this trend is set to continue across a greater range of business areas within financial services. The largest expected increase in use, in absolute terms, is in the insurance sector, followed by banking.
How Artificial Intelligence is Improving Open Source GIS
More and more companies are starting to use geospatial data for their machine learning applications to draw insights from the patterns of life. To better understand how they do this, we'll discuss what exactly is meant with Geospatial Artificial Intelligence (GeoAI). We'll cover the tasks that form part of (geospatial) machine learning and deep learning workflows, the prerequisites to perform these, and give an overview of the current tools and initiatives in the open source GIS community to integrate machine learning and deep learning into existing workflows. Artificial Intelligence is the science and engineering of making machines intelligent, so that they can achieve a task the way humans do. While true AI does not exist (yet), AI subfields are improving rapidly and already changing the way companies understand how people interact with their environment and how they make predictions based on the patterns they discover in their data, such as predicting traffic patterns or housing prices, or simply classifying large quantities of imagery data.
A Transformer Architecture for Online Gesture Recognition of Mathematical Expressions
Ramo, Mirco, Silvestre, Guรฉnolรฉ C. M.
The Transformer architecture is shown to provide a powerful framework as an end-to-end model for building expression trees from online handwritten gestures corresponding to glyph strokes. In particular, the attention mechanism was successfully used to encode, learn and enforce the underlying syntax of expressions creating latent representations that are correctly decoded to the exact mathematical expression tree, providing robustness to ablated inputs and unseen glyphs. For the first time, the encoder is fed with spatio-temporal data tokens potentially forming an infinitely large vocabulary, which finds applications beyond that of online gesture recognition. A new supervised dataset of online handwriting gestures is provided for training models on generic handwriting recognition tasks and a new metric is proposed for the evaluation of the syntactic correctness of the output expression trees. A small Transformer model suitable for edge inference was successfully trained to an average normalised Levenshtein accuracy of 94%, resulting in valid postfix RPN tree representation for 94% of predictions.
Capabilities and Skills in Manufacturing: A Survey Over the Last Decade of ETFA
Froschauer, Roman, Kรถcher, Aljosha, Meixner, Kristof, Schmitt, Siwara, Spitzer, Fabian
Industry 4.0 envisions Cyber-Physical Production Systems (CPPSs) to foster adaptive production of mass-customizable products. Manufacturing approaches based on capabilities and skills aim to support this adaptability by encapsulating machine functions and decoupling them from specific production processes. At the 2022 IEEE conference on Emerging Technologies and Factory Automation (ETFA), a special session on capability- and skill-based manufacturing is hosted for the fourth time. However, an overview on capability- and skill based systems in factory automation and manufacturing systems is missing. This paper aims to provide such an overview and give insights to this particular field of research. We conducted a concise literature survey of papers covering the topics of capabilities and skills in manufacturing from the last ten years of the ETFA conference. We found 247 papers with a notion on capabilities and skills and identified and analyzed 34 relevant papers which met this survey's inclusion criteria. In this paper, we provide (i) an overview of the research field, (ii) an analysis of the characteristics of capabilities and skills, and (iii) a discussion on gaps and opportunities.
Forecasting User Interests Through Topic Tag Predictions in Online Health Communities
Adishesha, Amogh Subbakrishna, Jakielaszek, Lily, Azhar, Fariha, Zhang, Peixuan, Honavar, Vasant, Ma, Fenglong, Belani, Chandra, Mitra, Prasenjit, Huang, Sharon Xiaolei
The increasing reliance on online communities for healthcare information by patients and caregivers has led to the increase in the spread of misinformation, or subjective, anecdotal and inaccurate or non-specific recommendations, which, if acted on, could cause serious harm to the patients. Hence, there is an urgent need to connect users with accurate and tailored health information in a timely manner to prevent such harm. This paper proposes an innovative approach to suggesting reliable information to participants in online communities as they move through different stages in their disease or treatment. We hypothesize that patients with similar histories of disease progression or course of treatment would have similar information needs at comparable stages. Specifically, we pose the problem of predicting topic tags or keywords that describe the future information needs of users based on their profiles, traces of their online interactions within the community (past posts, replies) and the profiles and traces of online interactions of other users with similar profiles and similar traces of past interaction with the target users. The result is a variant of the collaborative information filtering or recommendation system tailored to the needs of users of online health communities. We report results of our experiments on an expert curated data set which demonstrate the superiority of the proposed approach over the state of the art baselines with respect to accurate and timely prediction of topic tags (and hence information sources of interest).
The state-of-the-art review on resource allocation problem using artificial intelligence methods on various computing paradigms
Joloudari, Javad Hassannataj, Mojrian, Sanaz, Saadatfar, Hamid, Nodehi, Issa, Fazl, Fatemeh, shirkharkolaie, Sahar Khanjani, Alizadehsani, Roohallah, Kabir, H M Dipu, Tan, Ru-San, Acharya, U Rajendra
With the increasing growth of information through smart devices, increasing the quality level of human life requires various computational paradigms presentation including the Internet of Things, fog, and cloud. Between these three paradigms, the cloud computing paradigm as an emerging technology adds cloud layer services to the edge of the network so that resource allocation operations occur close to the end-user to reduce resource processing time and network traffic overhead. Hence, the resource allocation problem for its providers in terms of presenting a suitable platform, by using computational paradigms is considered a challenge. In general, resource allocation approaches are divided into two methods, including auction-based methods(goal, increase profits for service providers-increase user satisfaction and usability) and optimization-based methods(energy, cost, network exploitation, Runtime, reduction of time delay). In this paper, according to the latest scientific achievements, a comprehensive literature study (CLS) on artificial intelligence methods based on resource allocation optimization without considering auction-based methods in various computing environments are provided such as cloud computing, Vehicular Fog Computing, wireless, IoT, vehicular networks, 5G networks, vehicular cloud architecture,machine-to-machine communication(M2M),Train-to-Train(T2T) communication network, Peer-to-Peer(P2P) network. Since deep learning methods based on artificial intelligence are used as the most important methods in resource allocation problems; Therefore, in this paper, resource allocation approaches based on deep learning are also used in the mentioned computational environments such as deep reinforcement learning, Q-learning technique, reinforcement learning, online learning, and also Classical learning methods such as Bayesian learning, Cummins clustering, Markov decision process.