Approximation structure plays an important role in inference on loopy graphs. As a tractable structure, tree approximations have been utilized in the variational method of Ghahramani & Jordan (1997) and the sequential projection method of Frey et al. (2000). However, belief propagation represents each factor of the graph with a product of single-node messages. In this paper, belief propagation is extended to represent factors with tree approximations, by way of the expectation propagation framework. That is, each factor sends a "message" to all pairs of nodes in a tree structure. The result is more accurate inferences and more frequent convergence than ordinary belief propagation, at a lower cost than variational trees or double-loop algorithms.

The Google search engine has enjoyed huge success with its web page ranking algorithm, which exploits global, rather than local, hyperlink structure of the web using random walks. Here we propose a simple universal ranking algorithm for data lying in the Euclidean space, such as text or image data. The core idea of our method is to rank the data with respect to the intrinsic manifold structure collectively revealed by a great amount of data. Encouraging experimental results from synthetic, image, and text data illustrate the validity of our method.

We introduce an information theoretic method for nonparametric, nonlinear dimensionality reduction, based on the infinite cluster limit of rate distortion theory. By constraining the information available to manifold coordinates, a natural probabilistic map emerges that assigns original data to corresponding points on a lower dimensional manifold. With only the information-distortion trade off as a parameter, our method determines the shape of the manifold, its dimensionality, the probabilistic map and the prior that provide optimal description of the data.

Many problems in information processing involve some form of dimensionality reduction. In this paper, we introduce Locality Preserving Projections (LPP). These are linear projective maps that arise by solving a variational problem that optimally preserves the neighborhood structure of the data set. LPP should be seen as an alternative to Principal Component Analysis (PCA) - a classical linear technique that projects the data along the directions of maximal variance. When the high dimensional data lies on a low dimensional manifold embedded in the ambient space, the Locality Preserving Projections are obtained by finding the optimal linear approximations to the eigenfunctions of the Laplace Beltrami operator on the manifold.

We formulate linear dimensionality reduction as a semi-parametric estimation problem, enabling us to study its asymptotic behavior. We generalize the problem beyond additive Gaussian noise to (unknown) non-Gaussian additive noise, and to unbiased non-additive models.

Principal components analysis (PCA) is one of the most widely used techniques in machine learning and data mining. Minor components analysis (MCA) is less well known, but can also play an important role in the presence of constraints on the data distribution. In this paper we present a probabilistic model for "extreme components analysis" (XCA) which at the maximum likelihood solution extracts an optimal combination of principal and minor components. For a given number of components, the log-likelihood of the XCA model is guaranteed to be larger or equal than that of the probabilistic models for PCA and MCA. We describe an efficient algorithm to solve for the globally optimal solution. For log-convex spectra we prove that the solution consists of principal components only, while for log-concave spectra the solution consists of minor components. In general, the solution admits a combination of both. In experiments we explore the properties of XCA on some synthetic and real-world datasets.

We consider the question of predicting nonlinear time series. Kernel Dynamical Modeling (KDM), a new method based on kernels, is proposed as an extension to linear dynamical models. The kernel trick is used twice: first, to learn the parameters of the model, and second, to compute preimages of the time series predicted in the feature space by means of Support Vector Regression. Our model shows strong connection with the classic Kalman Filter model, with the kernel feature space as hidden state space. Kernel Dynamical Modeling is tested against two benchmark time series and achieves high quality predictions.

New feature selection algorithms for linear threshold functions are described which combine backward elimination with an adaptive regularization method. This makes them particularly suitable to the classification of microarray expression data, where the goal is to obtain accurate rules depending on few genes only. Our algorithms are fast and easy to implement, since they center on an incremental (large margin) algorithm which allows us to avoid linear, quadratic or higher-order programming methods. We report on preliminary experiments with five known DNA microarray datasets. These experiments suggest that multiplicative large margin algorithms tend to outperform additive algorithms (such as SVM) on feature selection tasks.

The Minimax Probability Machine Classification (MPMC) framework [Lanckriet et al., 2002] builds classifiers by minimizing the maximum probability of misclassification, and gives direct estimates of the probabilistic accuracy bound Ω. The only assumptions that MPMC makes is that good estimates of means and covariance matrices of the classes exist. However, as with Support Vector Machines, MPMC is computationally expensive and requires extensive cross validation experiments to choose kernels and kernel parameters that give good performance. In this paper we address the computational cost of MPMC by proposing an algorithm that constructs nonlinear sparse MPMC (SMPMC) models by incrementally adding basis functions (i.e.

A new feature extraction criterion, maximum margin criterion (MMC), is proposed in this paper. This new criterion is general in the sense that, when combined with a suitable constraint, it can actually give rise to the most popular feature extractor in the literature, linear discriminate analysis (LDA).