We introduce a new Bayesian model for hierarchical clustering based on a prior over trees called Kingman's coalescent. We develop novel greedy and sequential Monte Carlo inferences which operate in a bottom-up agglomerative fashion. We show experimentally the superiority of our algorithms over the state-of-the-art, and demonstrate our approach in document clustering and phylolinguistics.

Semantic memory refers to our knowledge of facts and relationships between concepts. Asuccessful semantic memory depends on inferring relationships between items that are not explicitly taught. Recent mathematical modeling of episodic memory argues that episodic recall relies on retrieval of a gradually-changing representation oftemporal context. We show that retrieved context enables the development of a global memory space that reflects relationships between all items that have been previously learned. When newly-learned information is integrated into this structure, it is placed in some relationship to all other items, even if that relationship has not been explicitly learned. We demonstrate this effect for global semantic structures shaped topologically as a ring, and as a two-dimensional sheet. We also examined the utility of this learning algorithm for learning a more realistic semantic space by training it on a large pool of synonym pairs. Retrieved context enabled the model to "infer" relationships between synonym pairs that had not yet been presented.

Unsupervised learning algorithms aim to discover the structure hidden in the data, and to learn representations that are more suitable as input to a supervised machine than the raw input. Many unsupervised methods are based on reconstructing the input from the representation, while constraining the representation to have certain desirable properties (e.g. low dimension, sparsity, etc). Others are based on approximating density by stochastically reconstructing the input from the representation. We describe a novel and efficient algorithm to learn sparse representations, and compare it theoretically and experimentally with a similar machines trained probabilistically, namely a Restricted Boltzmann Machine. We propose a simple criterion to compare and select different unsupervised machines based on the trade-off between the reconstruction error and the information content of the representation. We demonstrate this method by extracting features from a dataset of handwritten numerals, and from a dataset of natural image patches. We show that by stacking multiple levels of such machines and by training sequentially, high-order dependencies between the input variables can be captured.

In bioinformatics it is often desirable to combine data from various measurement sources and thus structured feature vectors are to be analyzed that possess different intrinsic blocking characteristics (e.g., different patterns of missing values, observation noiselevels, effective intrinsic dimensionalities). We propose a new machine learning tool, heterogeneous component analysis (HCA), for feature extraction in order to better understand the factors that underlie such complex structured heterogeneous data. HCA is a linear block-wise sparse Bayesian PCA based not only on a probabilistic model with block-wise residual variance terms but also on a Bayesian treatment of a block-wise sparse factor-loading matrix. We study various algorithmsthat implement our HCA concept extracting sparse heterogeneous structure by obtaining common components for the blocks and specific components withineach block. Simulations on toy and bioinformatics data underline the usefulness of the proposed structured matrix factorization concept.

In transfer learning we aim to solve new problems using fewer examples using information gained from solving related problems. Transfer learning has been successful in practice, and extensive PAC analysis of these methods has been developed. Howeverit is not yet clear how to define relatedness between tasks. This is considered as a major problem as it is conceptually troubling and it makes it unclear how much information to transfer and when and how to transfer it. In this paper we propose to measure the amount of information one task contains about another using conditional Kolmogorov complexity between the tasks. We show how existing theory neatly solves the problem of measuring relatedness and transferring the'right' amount of information in sequential transfer learning in a Bayesian setting. The theory also suggests that, in a very formal and precise sense, no other reasonable transfer method can do much better than our Kolmogorov Complexity theoretic transfer method, and that sequential transfer is always justified. Wealso develop a practical approximation to the method and use it to transfer information between 8 arbitrarily chosen databases from the UCI ML repository.

We present a new and efficient semi-supervised training method for parameter estimation and feature selection in conditional random fields (CRFs). In real-world applications such as activity recognition, unlabeled sensor traces are relatively easy to obtain whereas labeled examples are expensive and tedious to collect. Furthermore, the ability to automatically select a small subset of discriminatory features from a large pool can be advantageous in terms of computational speed as well as accuracy. In this paper, we introduce the semi-supervised virtual evidence boosting (sVEB) algorithm for training CRFs -- a semi-supervised extension to the recently developed virtual evidence boosting (VEB) method for feature selection and parameter learning. Semi-supervised VEB takes advantage of the unlabeled data via minimum entropy regularization -- the objective function combines the unlabeled conditional entropy with labeled conditional pseudo-likelihood. The sVEB algorithm reduces the overall system cost as well as the human labeling cost required during training, which are both important considerations in building real world inference systems. In a set of experiments on synthetic data and real activity traces collected from wearable sensors, we illustrate that our algorithm benefits from both the use of unlabeled data and automatic feature selection, and outperforms other semi-supervised training approaches.

Many tasks (e.g., clustering) in machine learning only require the l

We consider apprenticeship learning--learning from expert demonstrations--in the setting of large, complex domains. Past work in apprenticeship learning requires that the expert demonstrate complete trajectories through the domain. However, in many problems even an expert has difficulty controlling the system, which makes this approach infeasible. For example, consider the task of teaching aquadruped robot to navigate over extreme terrain; demonstrating an optimal policy (i.e., an optimal set of foot locations over the entire terrain) is a highly nontrivial task, even for an expert. In this paper we propose a method for hierarchical apprenticeshiplearning, which allows the algorithm to accept isolated advice at different hierarchical levels of the control task. This type of advice is often feasible for experts to give, even if the expert is unable to demonstrate complete trajectories.This allows us to extend the apprenticeship learning paradigm to much larger, more challenging domains. In particular, in this paper we apply the hierarchical apprenticeship learning algorithm to the task of quadruped locomotion overextreme terrain, and achieve, to the best of our knowledge, results superior to any previously published work.

When we have several related tasks, solving them simultaneously is shown to be more effective than solving them individually. This approach is called multi-task learning (MTL) and has been studied extensively. Existing approaches to MTL often treat all the tasks as \emph{uniformly related to each other and the relatedness of the tasks is controlled globally. For this reason, the existing methods can lead to undesired solutions when some tasks are not highly related to each other, and some pairs of related tasks can have significantly different solutions. In this paper, we propose a novel MTL algorithm that can overcome these problems. Our method makes use of a task network, which describes the relation structure among tasks. This allows us to deal with intricate relation structures in a systematic way. Furthermore, we control the relatedness of the tasks locally, so all pairs of related tasks are guaranteed to have similar solutions. We apply the above idea to support vector machines (SVMs) and show that the optimization problem can be cast as a second order cone program, which is convex and can be solved efficiently. The usefulness of our approach is demonstrated through simulations with protein super-family classification and ordinal regression problems.

In this paper, we use the "low-frequency"