Many data are naturally modeled by an unobserved hierarchical structure. In this paper we propose a flexible nonparametric prior over unknown data hierarchies. The approach uses nested stick-breaking processes to allow for trees of unbounded width and depth, where data can live at any node and are infinitely exchangeable. One can view our model as providing infinite mixtures where the components have a dependency structure corresponding to an evolutionary diffusion down a tree. By using a stick-breaking approach, we can apply Markov chain Monte Carlo methods based on slice sampling to perform Bayesian inference and simulate from the posterior distribution on trees. We apply our method to hierarchical clustering of images and topic modeling of text data.

Most current image categorization methods require large collections of manually annotated training examples to learn accurate visual recognition models. The time-consuming human labeling effort effectively limits these approaches to recognition problems involving a small number of different object classes. In order to address this shortcoming, in recent years several authors have proposed to learn object classifiers from weakly-labeled Internet images, such as photos retrieved by keyword-based image search engines. While this strategy eliminates the need for human supervision, the recognition accuracies of these methods are considerably lower than those obtained with fully-supervised approaches, because of the noisy nature of the labels associated to Web data. In this paper we investigate and compare methods that learn image classifiers by combining very few manually annotated examples (e.g., 1-10 images per class) and a large number of weakly-labeled Web photos retrieved using keyword-based image search. We cast this as a domain adaptation problem: given a few strongly-labeled examples in a target domain (the manually annotated examples) and many source domain examples (the weakly-labeled Web photos), learn classifiers yielding small generalization error on the target domain. Our experiments demonstrate that, for the same number of strongly-labeled examples, our domain adaptation approach produces significant recognition rate improvements over the best published results (e.g., 65% better when using 5 labeled training examples per class) and that our classifiers are one order of magnitude faster to learn and to evaluate than the best competing method, despite our use of large weakly-labeled data sets.

The commute distance between two vertices in a graph is the expected time it takes a random walk to travel from the first to the second vertex and back. We study the behavior of the commute distance as the size of the underlying graph increases. We prove that the commute distance converges to an expression that does not take into account the structure of the graph at all and that is completely meaningless as a distance function on the graph. Consequently, the use of the raw commute distance for machine learning purposes is strongly discouraged for large graphs and in high dimensions. As an alternative we introduce the amplified commute distance that corrects for the undesired large sample effects.

A new algorithm for isotonic regression is presented based on recursively partitioning the solution space. We develop efficient methods for each partitioning subproblem through an equivalent representation as a network flow problem, and prove that this sequence of partitions converges to the global solution. These network flow problems can further be decomposed in order to solve very large problems. Success of isotonic regression in prediction and our algorithm's favorable computational properties are demonstrated through simulated examples as large as 2x10^5 variables and 10^7 constraints.

In this paper, we propose an efficient algorithm for estimating the natural policy gradient with parameter-based exploration; this algorithm samples directly in the parameter space. Unlike previous methods based on natural gradients, our algorithm calculates the natural policy gradient using the inverse of the exact Fisher information matrix. The computational cost of this algorithm is equal to that of conventional policy gradients whereas previous natural policy gradient methods have a prohibitive computational cost. Experimental results show that the proposed method outperforms several policy gradient methods.

Recent approaches to multi-view learning have shown that factorizing the information into parts that are shared across all views and parts that are private to each view could effectively account for the dependencies and independencies between the different input modalities. Unfortunately, these approaches involve minimizing non-convex objective functions. In this paper, we propose an approach to learning such factorized representations inspired by sparse coding techniques. In particular, we show that structured sparsity allows us to address the multi-view learning problem by alternately solving two convex optimization problems. Furthermore, the resulting factorized latent spaces generalize over existing approaches in that they allow :having latent dimensions shared between any subset of the views instead of between all the views only. We show that our approach outperforms state-of-the-art methods on the task of human pose estimation.

We study worst-case bounds on the quality of any fixed point assignment of the max-product algorithm for Markov Random Fields (MRF). We start proving a bound independent of the MRF structure and parameters. Afterwards, we show how this bound can be improved for MRFs with particular structures such as bipartite graphs or grids. Our results provide interesting insight into the behavior of max-product. For example, we prove that max-product provides very good results (at least 90% of the optimal) on MRFs with large variable-disjoint cycles (MRFs in which all cycles are variable-disjoint, namely that they do not share any edge and in which each cycle contains at least 20 variables).

In this paper we consider the fundamental problem of semi-supervised kernel function learning. We propose a general regularized framework for learning a kernel matrix, and then demonstrate an equivalence between our proposed kernel matrix learning framework and a general linear transformation learning problem. Our result shows that the learned kernel matrices parameterize a linear transformation kernel function and can be applied inductively to new data points. Furthermore, our result gives a constructive method for kernelizing most existing Mahalanobis metric learning formulations. To make our results practical for large-scale data, we modify our framework to limit the number of parameters in the optimization process. We also consider the problem of kernelized inductive dimensionality reduction in the semi-supervised setting. We introduce a novel method for this problem by considering a special case of our general kernel learning framework where we select the trace norm function as the regularizer. We empirically demonstrate that our framework learns useful kernel functions, improving the $k$-NN classification accuracy significantly in a variety of domains. Furthermore, our kernelized dimensionality reduction technique significantly reduces the dimensionality of the feature space while achieving competitive classification accuracies.

To understand the relationship between genomic variations among population and complex diseases, it is essential to detect eQTLs which are associated with phenotypic effects.However, detecting eQTLs remains a challenge due to complex underlying mechanisms and the very large number of genetic loci involved compared tothe number of samples. Thus, to address the problem, it is desirable to take advantage of the structure of the data and prior information about genomic locations such as conservation scores and transcription factor binding sites. In this paper, we propose a novel regularized regression approach for detecting eQTLs which takes into account related traits simultaneously while incorporating many regulatory features. We first present a Bayesian network for a multi-task learning problem that includes priors on SNPs, making it possible to estimate the significance of each covariate adaptively. Then we find the maximum a posteriori (MAP) estimation of regression coefficients and estimate weights of covariates jointly. This optimization procedure is efficient since it can be achieved by using aprojected gradient descent and a coordinate descent procedure iteratively. Experimental results on simulated and real yeast datasets confirm that our model outperforms previous methods for finding eQTLs.

We propose a new probabilistic model for analyzing dynamic evolutions of relational data, such as additions, deletions and split & merge, of relation clusters like communities in social networks. Our proposed model abstracts observed time-varying object-object relationships into relationships between object clusters. We extend the infinite Hidden Markov model to follow dynamic and time-sensitive changes in the structure of the relational data and to estimate a number of clusters simultaneously. We show the usefulness of the model through experiments with synthetic and real-world data sets.