The problem of active diagnosis arises in several applications such as disease diagnosis, and fault diagnosis in computer networks, where the goal is to rapidly identify the binary states of a set of objects (e.g., faulty or working) by sequentially selecting, and observing, (noisy) responses to binary valued queries. Current algorithms in this area rely on loopy belief propagation for active query selection. These algorithms have an exponential time complexity, making them slow and even intractable in large networks. We propose a rank-based greedy algorithm that sequentially chooses queries such that the area under the ROC curve of the rank-based output is maximized. The AUC criterion allows us to make a simplifying assumption that significantly reduces the complexity of active query selection (from exponential to near quadratic), with little or no compromise on the performance quality.

We address the problem of learning the parameters in graphical models when inference is intractable. A common strategy in this case is to replace the partition function with its Bethe approximation. We show that there exists a regime of empirical marginals where such Bethe learning will fail. By failure we mean that the empirical marginals cannot be recovered from the approximated maximum likelihood parameters (i.e., moment matching is not achieved). We provide several conditions on empirical marginals that yield outer and inner bounds on the set of Bethe learnable marginals. An interesting implication of our results is that there exists a large class of marginals that cannot be obtained as stable fixed points of belief propagation. Taken together our results provide a novel approach to analyzing learning with Bethe approximations and highlight when it can be expected to work or fail.

Fisher score is one of the most widely used supervised feature selection methods. However, it selects each feature independently according to their scores under the Fisher criterion, which leads to a suboptimal subset of features. In this paper, we present a generalized Fisher score to jointly select features. It aims at finding an subset of features, which maximize the lower bound of traditional Fisher score. The resulting feature selection problem is a mixed integer programming, which can be reformulated as a quadratically constrained linear programming (QCLP). It is solved by cutting plane algorithm, in each iteration of which a multiple kernel learning problem is solved alternatively by multivariate ridge regression and projected gradient descent. Experiments on benchmark data sets indicate that the proposed method outperforms Fisher score as well as many other state-of-the-art feature selection methods.

We show that the Bregman divergence provides a rich framework to estimate unnormalized statistical models for continuous or discrete random variables, that is, models which do not integrate or sum to one, respectively. We prove that recent estimation methods such as noise-contrastive estimation, ratio matching, and score matching belong to the proposed framework, and explain their interconnection based on supervised learning. Further, we discuss the role of boosting in unsupervised learning.

We propose a method that infers whether linear relations between two high-dimensional variables X and Y are due to a causal influence from X to Y or from Y to X. The earlier proposed so-called Trace Method is extended to the regime where the dimension of the observed variables exceeds the sample size. Based on previous work, we postulate conditions that characterize a causal relation between X and Y. Moreover, we describe a statistical test and argue that both causal directions are typically rejected if there is a common cause. A full theoretical analysis is presented for the deterministic case but our approach seems to be valid for the noisy case, too, for which we additionally present an approach based on a sparsity constraint. The discussed method yields promising results for both simulated and real world data.

Such relaxations make STC amenable to: 1) directly control the sparsity of inferred representations by using sparsity-inducing regularizers; 2) be seamlessly integrated with a convex error function (e.g., SVM hinge loss) for supervised learning; and 3) be efficiently learned with a simply structured coordinate descent algorithm. Our results demonstrate the advantages of STC and supervised MedSTC on identifying topical meanings of words and improving classification accuracy and time efficiency.

A Support Vector Method for multivariate performance measures was recently introduced by Joachims (2005). The underlying optimization problem is currently solved using cutting plane methods such as SVM-Perf and BMRM. One can show that these algorithms converge to an eta accurate solution in O(1/Lambda*e) iterations, where lambda is the trade-off parameter between the regularizer and the loss function. We present a smoothing strategy for multivariate performance scores, in particular precision/recall break-even point and ROCArea. When combined with Nesterov's accelerated gradient algorithm our smoothing strategy yields an optimization algorithm which converges to an eta accurate solution in O(min{1/e,1/sqrt(lambda*e)}) iterations. Furthermore, the cost per iteration of our scheme is the same as that of SVM-Perf and BMRM. Empirical evaluation on a number of publicly available datasets shows that our method converges significantly faster than cutting plane methods without sacrificing generalization ability.

Conditional independence testing is an important problem, especially in Bayesian network learning and causal discovery. Due to the curse of dimensionality, testing for conditional independence of continuous variables is particularly challenging. We propose a Kernel-based Conditional Independence test (KCI-test), by constructing an appropriate test statistic and deriving its asymptotic distribution under the null hypothesis of conditional independence. The proposed method is computationally efficient and easy to implement. Experimental results show that it outperforms other methods, especially when the conditioning set is large or the sample size is not very large, in which case other methods encounter difficulties.

Due to myriads of classes, designing accurate and efficient classifiers becomes very challenging for multi-class classification. Recent research has shown that class structure learning can greatly facilitate multi-class learning. In this paper, we propose a novel method to learn the class structure for multi-class classification problems. The class structure is assumed to be a binary hierarchical tree. To learn such a tree, we propose a maximum separating margin method to determine the child nodes of any internal node. The proposed method ensures that two classgroups represented by any two sibling nodes are most separable. In the experiments, we evaluate the accuracy and efficiency of the proposed method over other multi-class classification methods on real world large-scale problems. The results show that the proposed method outperforms benchmark methods in terms of accuracy for most datasets and performs comparably with other class structure learning methods in terms of efficiency for all datasets.

We face network data from various sources, such as protein interactions and online social networks. A critical problem is to model network interactions and identify latent groups of network nodes. This problem is challenging due to many reasons. For example, the network nodes are interdependent instead of independent of each other, and the data are known to be very noisy (e.g., missing edges). To address these challenges, we propose a new relational model for network data, Sparse Matrix-variate Gaussian process Blockmodel (SMGB). Our model generalizes popular bilinear generative models and captures nonlinear network interactions using a matrix-variate Gaussian process with latent membership variables. We also assign sparse prior distributions on the latent membership variables to learn sparse group assignments for individual network nodes. To estimate the latent variables efficiently from data, we develop an efficient variational expectation maximization method. We compared our approaches with several state-of-the-art network models on both synthetic and real-world network datasets. Experimental results demonstrate SMGBs outperform the alternative approaches in terms of discovering latent classes or predicting unknown interactions.