Images obtained with coherent illumination, as is the case of sonar, ultrasound-B, laser and Synthetic Aperture Radar -- SAR, are affected by speckle noise which reduces the ability to extract information from the data. Specialized techniques are required to deal with such imagery, which has been modeled by the G0 distribution and under which regions with different degrees of roughness and mean brightness can be characterized by two parameters; a third parameter, the number of looks, is related to the overall signal-to-noise ratio. Assessing distances between samples is an important step in image analysis; they provide grounds of the separability and, therefore, of the performance of classification procedures. This work derives and compares eight stochastic distances and assesses the performance of hypothesis tests that employ them and maximum likelihood estimation. We conclude that tests based on the triangular distance have the closest empirical size to the theoretical one, while those based on the arithmetic-geometric distances have the best power. Since the power of tests based on the triangular distance is close to optimum, we conclude that the safest choice is using this distance for hypothesis testing, even when compared with classical distances as Kullback-Leibler and Bhattacharyya.

The task of matching co-referent records is known among other names as rocord linkage. For large record-linkage problems, often there is little or no labeled data available, but unlabeled data shows a reasonable clear structure. For such problems, unsupervised or semi-supervised methods are preferable to supervised methods. In this paper, we describe a hierarchical graphical model framework for the linakge-problem in an unsupervised setting. In addition to proposing new methods, we also cast existing unsupervised probabilistic record-linkage methods in this framework. Some of the techniques we propose to minimize overfitting in the above model are of interest in the general graphical model setting. We describe a method for incorporating monotinicity constraints in a graphical model. We also outline a bootstrapping approach of using "single-field" classifiers to noisily label latent variables in a hierarchical model. Experimental results show that our proposed unsupervised methods perform quite competitively even with fully supervised record-linkage methods.

Microarray cancer gene expression data comprise of very high dimensions. Reducing the dimensions helps in improving the overall analysis and classification performance. We propose two hybrid techniques, Biogeography - based Optimization - Random Forests (BBO - RF) and BBO - SVM (Support Vector Machines) with gene ranking as a heuristic, for microarray gene expression analysis. This heuristic is obtained from information gain filter ranking procedure. The BBO algorithm generates a population of candidate subset of genes, as part of an ecosystem of habitats, and employs the migration and mutation processes across multiple generations of the population to improve the classification accuracy. The fitness of each gene subset is assessed by the classifiers - SVM and Random Forests. The performances of these hybrid techniques are evaluated on three cancer gene expression datasets retrieved from the Kent Ridge Biomedical datasets collection and the libSVM data repository. Our results demonstrate that genes selected by the proposed techniques yield classification accuracies comparable to previously reported algorithms.

Mixtures of truncated exponentials (MTE) potentials are an alternative to discretization for representing continuous chance variables in influence diagrams. Also, MTE potentials can be used to approximate utility functions. This paper introduces MTE influence diagrams, which can represent decision problems without restrictions on the relationships between continuous and discrete chance variables, without limitations on the distributions of continuous chance variables, and without limitations on the nature of the utility functions. In MTE influence diagrams, all probability distributions and the joint utility function (or its multiplicative factors) are represented by MTE potentials and decision nodes are assumed to have discrete state spaces. MTE influence diagrams are solved by variable elimination using a fusion algorithm.

Message passing type algorithms such as the so-called Belief Propagation algorithm have recently gained a lot of attention in the statistics, signal processing and machine learning communities as attractive algorithms for solving a variety of optimization and inference problems. As a decentralized, easy to implement and empirically successful algorithm, BP deserves attention from the theoretical standpoint, and here not much is known at the present stage. In order to fill this gap we consider the performance of the BP algorithm in the context of the capacitated minimum-cost network flow problem - the classical problem in the operations research field. We prove that BP converges to the optimal solution in the pseudo-polynomial time, provided that the optimal solution of the underlying problem is unique and the problem input is integral. Moreover, we present a simple modification of the BP algorithm which gives a fully polynomial-time randomized approximation scheme (FPRAS) for the same problem, which no longer requires the uniqueness of the optimal solution. This is the first instance where BP is proved to have fully-polynomial running time. Our results thus provide a theoretical justification for the viability of BP as an attractive method to solve an important class of optimization problems.

Ancestral graph models, introduced by Richardson and Spirtes (2002), generalize both Markov random fields and Bayesian networks to a class of graphs with a global Markov property that is closed under conditioning and marginalization. By design, ancestral graphs encode precisely the conditional independence structures that can arise from Bayesian networks with selection and unobserved (hidden/latent) variables. Thus, ancestral graph models provide a potentially very useful framework for exploratory model selection when unobserved variables might be involved in the data-generating process but no particular hidden structure can be specified. In this paper, we present the Iterative Conditional Fitting (ICF) algorithm for maximum likelihood estimation in Gaussian ancestral graph models. The name reflects that in each step of the procedure a conditional distribution is estimated, subject to constraints, while a marginal distribution is held fixed. This approach is in duality to the well-known Iterative Proportional Fitting algorithm, in which marginal distributions are fitted while conditional distributions are held fixed.

Although information extraction and coreference resolution appear together in many applications, most current systems perform them as independent steps. This paper describes an approach to integrated inference for extraction and coreference based on conditionally-trained undirected graphical models. We discuss the advantages of conditional probability training, and of a coreference model structure based on graph partitioning. On a data set of research paper citations, we show significant reduction in error by using extraction uncertainty to improve coreference citation matching accuracy, and using coreference to improve the accuracy of the extracted fields.

Classical learning assumes the learner is given a labeled data sample, from which it learns a model. The field of Active Learning deals with the situation where the learner begins not with a training sample, but instead with resources that it can use to obtain information to help identify the optimal model. To better understand this task, this paper presents and analyses the simplified "(budgeted) active model selection" version, which captures the pure exploration aspect of many active learning problems in a clean and simple problem formulation. Here the learner can use a fixed budget of "model probes" (where each probe evaluates the specified model on a random indistinguishable instance) to identify which of a given set of possible models has the highest expected accuracy. Our goal is a policy that sequentially determines which model to probe next, based on the information observed so far. We present a formal description of this task, and show that it is NPhard in general. We then investigate a number of algorithms for this task, including several existing ones (eg, "Round-Robin", "Interval Estimation", "Gittins") as well as some novel ones (e.g., "Biased-Robin"), describing first their approximation properties and then their empirical performance on various problem instances. We observe empirically that the simple biased-robin algorithm significantly outperforms the other algorithms in the case of identical costs and priors.

Recent research has made significant progress on the problem of bounding log partition functions for exponential family graphical models. Such bounds have associated dual parameters that are often used as heuristic estimates of the marginal probabilities required in inference and learning. However these variational estimates do not give rigorous bounds on marginal probabilities, nor do they give estimates for probabilities of more general events than simple marginals. In this paper we build on this recent work by deriving rigorous upper and lower bounds on event probabilities for graphical models. Our approach is based on the use of generalized Chernoff bounds to express bounds on event probabilities in terms of convex optimization problems; these optimization problems, in turn, require estimates of generalized log partition functions. Simulations indicate that this technique can result in useful, rigorous bounds to complement the heuristic variational estimates, with comparable computational cost.

We intro duce the author-topic mo del, a generative mo del for do cuments that extends Latent Dirichlet Allo cation (LDA; Blei, Ng, & Jordan, 2003) to include authorship information. Each author is asso ciated with a multinomial distribution over topics and each topic is asso ciated with a multinomial distribution over words. A do cument with multiple authors is mo deled as a distribution over topics that is a mixture of the distributions asso ci-ated with the authors. We apply the mo del to a collection of 1,700 NIPS conference pap ers and 160,000 CiteSeer abstracts. Exact inference is intractable for these datasets and we use Gibbs sampling to estimate the topic and author distributions. We compare the p erformance with two other generative mo d-els for do cuments, which are sp ecial cases of the author-topic mo del: LDA (a topic mo del) and a simple author mo del in which each author is asso ciated with a distribution over words rather than a distribution over topics. We show topics recovered by the author-topic mo del, and demonstrate applications to computing similarity b etween authors and entropy of author output.