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Sparse Overlapping Sets Lasso for Multitask Learning and its Application to fMRI Analysis
Rao, Nikhil, Cox, Christopher, Nowak, Robert, Rogers, Timothy
Multitask learning can be effective when features useful in one task are also useful for other tasks, and the group lasso is a standard method for selecting a common subset of features. In this paper, we are interested in a less restrictive form of multitask learning, wherein (1) the available features can be organized into subsets according to a notion of similarity and (2) features useful in one task are similar, but not necessarily identical, to the features best suited for other tasks. The main contribution of this paper is a new procedure called Sparse Overlapping Sets (SOS) lasso, a convex optimization that automatically selects similar features for related learning tasks. Error bounds are derived for SOSlasso and its consistency is established for squared error loss. In particular, SOSlasso is motivated by multi- subject fMRI studies in which functional activity is classified using brain voxels as features. Experiments with real and synthetic data demonstrate the advantages of SOSlasso compared to the lasso and group lasso.
A Unified SVM Framework for Signal Estimation
Rojo-รlvarez, Josรฉ Luis, Martรญnez-Ramรณn, Manel, Muรฑoz-Marรญ, Jordi, Camps-Valls, Gustavo
This paper presents a unified framework to tackle estimation problems in Digital Signal Processing (DSP) using Support Vector Machines (SVMs). The use of SVMs in estimation problems has been traditionally limited to its mere use as a black-box model. Noting such limitations in the literature, we take advantage of several properties of Mercer's kernels and functional analysis to develop a family of SVM methods for estimation in DSP. Three types of signal model equations are analyzed. First, when a specific time-signal structure is assumed to model the underlying system that generated the data, the linear signal model (so called Primal Signal Model formulation) is first stated and analyzed. Then, non-linear versions of the signal structure can be readily developed by following two different approaches. On the one hand, the signal model equation is written in reproducing kernel Hilbert spaces (RKHS) using the well-known RKHS Signal Model formulation, and Mercer's kernels are readily used in SVM non-linear algorithms. On the other hand, in the alternative and not so common Dual Signal Model formulation, a signal expansion is made by using an auxiliary signal model equation given by a non-linear regression of each time instant in the observed time series. These building blocks can be used to generate different novel SVM-based methods for problems of signal estimation, and we deal with several of the most important ones in DSP. We illustrate the usefulness of this methodology by defining SVM algorithms for linear and non-linear system identification, spectral analysis, nonuniform interpolation, sparse deconvolution, and array processing. The performance of the developed SVM methods is compared to standard approaches in all these settings. The experimental results illustrate the generality, simplicity, and capabilities of the proposed SVM framework for DSP.
Dealing with the Fuzziness of Human Reasoning
Voskoglou, Michael Gr., Subbotin, Igor Ya.
Reasoning, the most important human brain operation, is characterized by a degree of fuzziness. In the present paper we construct a fuzzy model for the reasoning process giving through the calculation of probabilities and possibilities of all possible individuals' profiles a quantitative/qualitative view of their behaviour during the above process. In this model the main stages of human reasoning (imagination, visualisation and generation of ideas) are represented as fuzzy subsets of a set of linguistic labels characterizing a person's performance in each stage. Further, using the coordinates of the centre of gravity of the graph of the corresponding membership function we develop a method of measuring the reasoning skills of a group of individuals. We also present a number of classroom experiments with student groups' of T. E. I. of Patras, Greece, illustrating our results in practice.
Robust Compressed Sensing and Sparse Coding with the Difference Map
Landecker, Will, Chartrand, Rick, DeDeo, Simon
In compressed sensing, we wish to reconstruct a sparse signal $x$ from observed data $y$. In sparse coding, on the other hand, we wish to find a representation of an observed signal $y$ as a sparse linear combination, with coefficients $x$, of elements from an overcomplete dictionary. While many algorithms are competitive at both problems when $x$ is very sparse, it can be challenging to recover $x$ when it is less sparse. We present the Difference Map, which excels at sparse recovery when sparseness is lower and noise is higher. The Difference Map out-performs the state of the art with reconstruction from random measurements and natural image reconstruction via sparse coding.
Optimal classification in sparse Gaussian graphic model
Fan, Yingying, Jin, Jiashun, Yao, Zhigang
Consider a two-class classification problem where the number of features is much larger than the sample size. The features are masked by Gaussian noise with mean zero and covariance matrix $\Sigma$, where the precision matrix $\Omega=\Sigma^{-1}$ is unknown but is presumably sparse. The useful features, also unknown, are sparse and each contributes weakly (i.e., rare and weak) to the classification decision. By obtaining a reasonably good estimate of $\Omega$, we formulate the setting as a linear regression model. We propose a two-stage classification method where we first select features by the method of Innovated Thresholding (IT), and then use the retained features and Fisher's LDA for classification. In this approach, a crucial problem is how to set the threshold of IT. We approach this problem by adapting the recent innovation of Higher Criticism Thresholding (HCT). We find that when useful features are rare and weak, the limiting behavior of HCT is essentially just as good as the limiting behavior of ideal threshold, the threshold one would choose if the underlying distribution of the signals is known (if only). Somewhat surprisingly, when $\Omega$ is sufficiently sparse, its off-diagonal coordinates usually do not have a major influence over the classification decision. Compared to recent work in the case where $\Omega$ is the identity matrix [Proc. Natl. Acad. Sci. USA 105 (2008) 14790-14795; Philos. Trans. R. Soc. Lond. Ser. A Math. Phys. Eng. Sci. 367 (2009) 4449-4470], the current setting is much more general, which needs a new approach and much more sophisticated analysis. One key component of the analysis is the intimate relationship between HCT and Fisher's separation. Another key component is the tight large-deviation bounds for empirical processes for data with unconventional correlation structures, where graph theory on vertex coloring plays an important role.
Hypothesis Testing for Automated Community Detection in Networks
Bickel, Peter J., Sarkar, Purnamrita
Community detection in networks is a key exploratory tool with applications in a diverse set of areas, ranging from finding communities in social and biological networks to identifying link farms in the World Wide Web. The problem of finding communities or clusters in a network has received much attention from statistics, physics and computer science. However, most clustering algorithms assume knowledge of the number of clusters k. In this paper we propose to automatically determine k in a graph generated from a Stochastic Blockmodel. Our main contribution is twofold; first, we theoretically establish the limiting distribution of the principal eigenvalue of the suitably centered and scaled adjacency matrix, and use that distribution for our hypothesis test. Secondly, we use this test to design a recursive bipartitioning algorithm. Using quantifiable classification tasks on real world networks with ground truth, we show that our algorithm outperforms existing probabilistic models for learning overlapping clusters, and on unlabeled networks, we show that we uncover nested community structure.
Analyzing Evolutionary Optimization in Noisy Environments
Qian, Chao, Yu, Yang, Zhou, Zhi-Hua
Many optimization tasks have to be handled in noisy environments, where we cannot obtain the exact evaluation of a solution but only a noisy one. For noisy optimization tasks, evolutionary algorithms (EAs), a kind of stochastic metaheuristic search algorithm, have been widely and successfully applied. Previous work mainly focuses on empirical studying and designing EAs for noisy optimization, while, the theoretical counterpart has been little investigated. In this paper, we investigate a largely ignored question, i.e., whether an optimization problem will always become harder for EAs in a noisy environment. We prove that the answer is negative, with respect to the measurement of the expected running time. The result implies that, for optimization tasks that have already been quite hard to solve, the noise may not have a negative effect, and the easier a task the more negatively affected by the noise. On a representative problem where the noise has a strong negative effect, we examine two commonly employed mechanisms in EAs dealing with noise, the re-evaluation and the threshold selection strategies. The analysis discloses that the two strategies, however, both are not effective, i.e., they do not make the EA more noise tolerant. We then find that a small modification of the threshold selection allows it to be proven as an effective strategy for dealing with the noise in the problem.
A survey on independence-based Markov networks learning
Name Reference Comments KS Koller and Sahami (1996) - Not Sound - The first one of this type - Requires specifying MB size in advance GS Margaritis and Thrun (2000) - Sound in theory - Proposed to learn Bayesian network via the induction of neighbors of each variable - First proved such kind of algorithm - Works in two phases: grow and shrink IAMB and its variants Tsamardinos et al (2003) - Sound in theory - Actually variant of GS - Simple to implement - Time efficient - Very poor on data efficiency - IAMB's variants achieve better performance on data efficiency than IAMB HITON-PC/MB Aliferis et al (2003) - Not sound - Another trial to make use of the topology information to enhance data efficiency - Data efficiency comparable to IAMB - Much slower compared to IAMB Fast-IAMB Yaramakala and Margaritis (2005) - Sound in theory - No fundamental difference as compared to IAMB - Adds candidates more greedily to speed up the learning - Still poor on data efficiency performance MMPC/MB Tsamardinos et al (2006) - Not sound - The first to make use of the underling topology information - Much more data efficient compared to IAMB - Much slower compared to IAMB PCMB Peรฑa et al (2007) - Sound in theory - Data efficient by making use of topology information - Poor on time efficiency - Distinguish spouses from parents/children - Distinguish some children from parents/children IPC-MB Fu and Desmarais (2008) - Sound in theory - Most data efficient compared with previous algorithms - Much faster than PCMB on computing - Distinguish spouses from parents/children - Distinguish some children from parents/children - Best tradeoff among this family of algorithms
Stochastic gradient descent on Riemannian manifolds
Stochastic gradient descent is a simple approach to find the local minima of a cost function whose evaluations are corrupted by noise. In this paper, we develop a procedure extending stochastic gradient descent algorithms to the case where the function is defined on a Riemannian manifold. We prove that, as in the Euclidian case, the gradient descent algorithm converges to a critical point of the cost function. The algorithm has numerous potential applications, and is illustrated here by four examples. In particular a novel gossip algorithm on the set of covariance matrices is derived and tested numerically.
Nonparametric Bayes dynamic modeling of relational data
Durante, Daniele, Dunson, David B.
Symmetric binary matrices representing relations among entities are commonly collected in many areas. Our focus is on dynamically evolving binary relational matrices, with interest being in inference on the relationship structure and prediction. We propose a nonparametric Bayesian dynamic model, which reduces dimensionality in characterizing the binary matrix through a lower-dimensional latent space representation, with the latent coordinates evolving in continuous time via Gaussian processes. By using a logistic mapping function from the probability matrix space to the latent relational space, we obtain a flexible and computational tractable formulation. Employing P\`olya-Gamma data augmentation, an efficient Gibbs sampler is developed for posterior computation, with the dimension of the latent space automatically inferred. We provide some theoretical results on flexibility of the model, and illustrate performance via simulation experiments. We also consider an application to co-movements in world financial markets.