Simultaneous recordings of the activity of large neural populations are extremely valuable as they can be used to infer the dynamics and interactions of neurons in a local circuit, shedding light on the computations performed. It is now possible to measure the activity of hundreds of neurons using 2-photon calcium imaging. However, many computations are thought to involve circuits consisting of thousands of neurons, such as cortical barrels in rodent somatosensory cortex. Here we contribute a statistical method for stitching" together sequentially imaged sets of neurons into one model by phrasing the problem as fitting a latent dynamical system with missing observations. This method allows us to substantially expand the population-sizes for which population dynamics can be characterized---beyond the number of simultaneously imaged neurons. In particular, we demonstrate using recordings in mouse somatosensory cortex that this method makes it possible to predict noise correlations between non-simultaneously recorded neuron pairs."

Multilayer perceptrons (MLPs) or neural networks are popular models used for nonlinear regression and classification tasks. As regressors, MLPs model the conditional distribution of the predictor variables Y given the input variables X. However, this predictive distribution is assumed to be unimodal (e.g. Gaussian). For tasks such as structured prediction problems, the conditional distribution should be multimodal, forming one-to-many mappings. By using stochastic hidden variables rather than deterministic ones, Sigmoid Belief Nets (SBNs) can induce a rich multimodal distribution in the output space. However, previously proposed learning algorithms for SBNs are very slow and do not work well for real-valued data. In this paper, we propose a stochastic feedforward network with hidden layers having \emph{both deterministic and stochastic} variables. A new Generalized EM training procedure using importance sampling allows us to efficiently learn complicated conditional distributions. We demonstrate the superiority of our model to conditional Restricted Boltzmann Machines and Mixture Density Networks on synthetic datasets and on modeling facial expressions. Moreover, we show that latent features of our model improves classification and provide additional qualitative results on color images.

We propose a learning setting in which unlabeled data is free, and the cost of a label depends on its value, which is not known in advance. We study binary classification in an extreme case, where the algorithm only pays for negative labels. Our motivation are applications such as fraud detection, in which investigating an honest transaction should be avoided if possible. We term the setting auditing, and consider the auditing complexity of an algorithm: The number of negative points it labels to learn a hypothesis with low relative error. We design auditing algorithms for thresholds on the line and axis-aligned rectangles, and show that with these algorithms, the auditing complexity can be significantly lower than the active label complexity. We discuss a general approach for auditing for a general hypothesis class, and describe several interesting directions for future work.

Recent work on mid-level visual representations aims to capture information at the level of complexity higher than typical visual words", but lower than full-blown semantic objects. Several approaches have been proposed to discover mid-level visual elements, that are both 1) representative, i.e. frequently occurring within a visual dataset, and 2) visually discriminative. However, the current approaches are rather ad hoc and difficult to analyze and evaluate. In this work, we pose visual element discovery as discriminative mode seeking, drawing connections to the the well-known and well-studied mean-shift algorithm. Given a weakly-labeled image collection, our method discovers visually-coherent patch clusters that are maximally discriminative with respect to the labels. One advantage of our formulation is that it requires only a single pass through the data. We also propose the Purity-Coverage plot as a principled way of experimentally analyzing and evaluating different visual discovery approaches, and compare our method against prior work on the Paris Street View dataset. We also evaluate our method on the task of scene classification, demonstrating state-of-the-art performance on the MIT Scene-67 dataset."

Distance-based approaches to outlier detection are popular in data mining, as they do not require to model the underlying probability distribution, which is particularly challenging for high-dimensional data. We present an empirical comparison of various approaches to distance-based outlier detection across a large number of datasets. We report the surprising observation that a simple, sampling-based scheme outperforms state-of-the-art techniques in terms of both efficiency and effectiveness. To better understand this phenomenon, we provide a theoretical analysis why the sampling-based approach outperforms alternative methods based on k-nearest neighbor search.

This paper presents Correlated Nystrom Views (XNV), a fast semi-supervised algorithm for regression and classification. The algorithm draws on two main ideas. First, it generates two views consisting of computationally inexpensive random features. Second, multiview regression, using Canonical Correlation Analysis (CCA) on unlabeled data, biases the regression towards useful features. It has been shown that CCA regression can substantially reduce variance with a minimal increase in bias if the views contains accurate estimators. Recent theoretical and empirical work shows that regression with random features closely approximates kernel regression, implying that the accuracy requirement holds for random views. We show that XNV consistently outperforms a state-of-the-art algorithm for semi-supervised learning: substantially improving predictive performance and reducing the variability of performance on a wide variety of real-world datasets, whilst also reducing runtime by orders of magnitude.

Despite growing interest and practical use in various scientific areas, variable importances derived from tree-based ensemble methods are not well understood from a theoretical point of view. In this work we characterize the Mean Decrease Impurity (MDI) variable importances as measured by an ensemble of totally randomized trees in asymptotic sample and ensemble size conditions. We derive a three-level decomposition of the information jointly provided by all input variables about the output in terms of i) the MDI importance of each input variable, ii) the degree of interaction of a given input variable with the other input variables, iii) the different interaction terms of a given degree. We then show that this MDI importance of a variable is equal to zero if and only if the variable is irrelevant and that the MDI importance of a relevant variable is invariant with respect to the removal or the addition of irrelevant variables. We illustrate these properties on a simple example and discuss how they may change in the case of non-totally randomized trees such as Random Forests and Extra-Trees.

We propose a scalable approach for making inference about latent spaces of large networks. With a succinct representation of networks as a bag of triangular motifs, a parsimonious statistical model, and an efficient stochastic variational inference algorithm, we are able to analyze real networks with over a million vertices and hundreds of latent roles on a single machine in a matter of hours, a setting that is out of reach for many existing methods. When compared to the state-of-the-art probabilistic approaches, our method is several orders of magnitude faster, with competitive or improved accuracy for latent space recovery and link prediction.

We present a novel non-parametric method for finding a subspace of stimulus features that contains all information about the response of a system. Our method generalizes similar approaches to this problem such as spike triggered average, spike triggered covariance, or maximally informative dimensions. Instead of maximizing the mutual information between features and responses directly, we use integral probability metrics in kernel Hilbert spaces to minimize the information between uninformative features and the combination of informative features and responses. Since estimators of these metrics access the data via kernels, are easy to compute, and exhibit good theoretical convergence properties, our method can easily be generalized to populations of neurons or spike patterns. By using a particular expansion of the mutual information, we can show that the informative features must contain all information if we can make the uninformative features independent of the rest.

We propose a fast algorithm for ridge regression when the number of features is much larger than the number of observations ($p \gg n$). The standard way to solve ridge regression in this setting works in the dual space and gives a running time of $O(n^2p)$. Our algorithm (SRHT-DRR) runs in time $O(np\log(n))$ and works by preconditioning the design matrix by a Randomized Walsh-Hadamard Transform with a subsequent subsampling of features. We provide risk bounds for our SRHT-DRR algorithm in the fixed design setting and show experimental results on synthetic and real datasets.