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Predicting Alzheimer's disease: a neuroimaging study with 3D convolutional neural networks

arXiv.org Machine Learning

Alzheimer's Disease (AD) is the most common type of dementia. Dementia refers to diseases that are characterized by a loss of memory or other cognitive impairments, and is caused by damage to nerve cells in the brain. In the United States, an estimated 5.2 million people of all ages have AD in 2014. Mild cognitive impairment (MCI) is a condition in which an individual has mild but noticeable changes in thinking abilities. Individuals with MCI are more likely to develop AD than inviduals without [1]. Early detection of the disease can be achieved by magnetic resonance imaging (MRI), a technique that uses a magnetic field and radio waves to create a detailed 3D image of the brain.


From Predictive to Prescriptive Analytics

arXiv.org Machine Learning

In this paper, we combine ideas from machine learning (ML) and operations research and management science (OR/MS) in developing a framework, along with specific methods, for using data to prescribe decisions in OR/MS problems. In a departure from other work on data-driven optimization and reflecting our practical experience with the data available in applications of OR/MS, we consider data consisting, not only of observations of quantities with direct effect on costs/revenues, such as demand or returns, but predominantly of observations of associated auxiliary quantities. The main problem of interest is a conditional stochastic optimization problem, given imperfect observations, where the joint probability distributions that specify the problem are unknown. We demonstrate that our proposed solution methods are generally applicable to a wide range of decision problems. We prove that they are computationally tractable and asymptotically optimal under mild conditions even when data is not independent and identically distributed (iid) and even for censored observations. As an analogue to the coefficient of determination $R^2$, we develop a metric $P$ termed the coefficient of prescriptiveness to measure the prescriptive content of data and the efficacy of a policy from an operations perspective. To demonstrate the power of our approach in a real-world setting we study an inventory management problem faced by the distribution arm of an international media conglomerate, which ships an average of 1 billion units per year. We leverage both internal data and public online data harvested from IMDb, Rotten Tomatoes, and Google to prescribe operational decisions that outperform baseline measures. Specifically, the data we collect, leveraged by our methods, accounts for an 88% improvement as measured by our coefficient of prescriptiveness.


Generative Moment Matching Networks

arXiv.org Machine Learning

We consider the problem of learning deep generative models from data. We formulate a method that generates an independent sample via a single feedforward pass through a multilayer perceptron, as in the recently proposed generative adversarial networks (Goodfellow et al., 2014). Training a generative adversarial network, however, requires careful optimization of a difficult minimax program. Instead, we utilize a technique from statistical hypothesis testing known as maximum mean discrepancy (MMD), which leads to a simple objective that can be interpreted as matching all orders of statistics between a dataset and samples from the model, and can be trained by backpropagation. We further boost the performance of this approach by combining our generative network with an auto-encoder network, using MMD to learn to generate codes that can then be decoded to produce samples. We show that the combination of these techniques yields excellent generative models compared to baseline approaches as measured on MNIST and the Toronto Face Database.


Deep Learning with Limited Numerical Precision

arXiv.org Machine Learning

Training of large-scale deep neural networks is often constrained by the available computational resources. We study the effect of limited precision data representation and computation on neural network training. Within the context of low-precision fixed-point computations, we observe the rounding scheme to play a crucial role in determining the network's behavior during training. Our results show that deep networks can be trained using only 16-bit wide fixed-point number representation when using stochastic rounding, and incur little to no degradation in the classification accuracy. We also demonstrate an energy-efficient hardware accelerator that implements low-precision fixed-point arithmetic with stochastic rounding.


Particle Gibbs with Ancestor Sampling for Probabilistic Programs

arXiv.org Artificial Intelligence

Particle Markov chain Monte Carlo techniques rank among current state-of-the-art methods for probabilistic program inference. A drawback of these techniques is that they rely on importance resampling, which results in degenerate particle trajectories and a low effective sample size for variables sampled early in a program. We here develop a formalism to adapt ancestor resampling, a technique that mitigates particle degeneracy, to the probabilistic programming setting. We present empirical results that demonstrate nontrivial performance gains.


Tensor Canonical Correlation Analysis for Multi-view Dimension Reduction

arXiv.org Machine Learning

Canonical correlation analysis (CCA) has proven an effective tool for two-view dimension reduction due to its profound theoretical foundation and success in practical applications. In respect of multi-view learning, however, it is limited by its capability of only handling data represented by two-view features, while in many real-world applications, the number of views is frequently many more. Although the ad hoc way of simultaneously exploring all possible pairs of features can numerically deal with multi-view data, it ignores the high order statistics (correlation information) which can only be discovered by simultaneously exploring all features. Therefore, in this work, we develop tensor CCA (TCCA) which straightforwardly yet naturally generalizes CCA to handle the data of an arbitrary number of views by analyzing the covariance tensor of the different views. TCCA aims to directly maximize the canonical correlation of multiple (more than two) views. Crucially, we prove that the multi-view canonical correlation maximization problem is equivalent to finding the best rank-1 approximation of the data covariance tensor, which can be solved efficiently using the well-known alternating least squares (ALS) algorithm. As a consequence, the high order correlation information contained in the different views is explored and thus a more reliable common subspace shared by all features can be obtained. In addition, a non-linear extension of TCCA is presented. Experiments on various challenge tasks, including large scale biometric structure prediction, internet advertisement classification and web image annotation, demonstrate the effectiveness of the proposed method.


Measuring the functional connectome "on-the-fly": towards a new control signal for fMRI-based brain-computer interfaces

arXiv.org Machine Learning

There has been an explosion of interest in functional Magnetic Resonance Imaging (MRI) during the past two decades. Naturally, this has been accompanied by many major advances in the understanding of the human connectome. These advances have served to pose novel challenges as well as open new avenues for research. One of the most promising and exciting of such avenues is the study of functional MRI in real-time. Such studies have recently gained momentum and have been applied in a wide variety of settings; ranging from training of healthy subjects to self-regulate neuronal activity to being suggested as potential treatments for clinical populations. To date, the vast majority of these studies have focused on a single region at a time. This is due in part to the many challenges faced when estimating dynamic functional connectivity networks in real-time. In this work we propose a novel methodology with which to accurately track changes in functional connectivity networks in real-time. We adapt the recently proposed SINGLE algorithm for estimating sparse and temporally homo- geneous dynamic networks to be applicable in real-time. The proposed method is applied to motor task data from the Human Connectome Project as well as to real-time data ob- tained while exploring a virtual environment. We show that the algorithm is able to estimate significant task-related changes in network structure quickly enough to be useful in future brain-computer interface applications.


Contextual Markov Decision Processes

arXiv.org Machine Learning

We consider a planning problem where the dynamics and rewards of the environment depend on a hidden static parameter referred to as the context. The objective is to learn a strategy that maximizes the accumulated reward across all contexts. The new model, called Contextual Markov Decision Process (CMDP), can model a customer's behavior when interacting with a website (the learner). The customer's behavior depends on gender, age, location, device, etc. Based on that behavior, the website objective is to determine customer characteristics, and to optimize the interaction between them. Our work focuses on one basic scenario--finite horizon with a small known number of possible contexts. We suggest a family of algorithms with provable guarantees that learn the underlying models and the latent contexts, and optimize the CMDPs. Bounds are obtained for specific naive implementations, and extensions of the framework are discussed, laying the ground for future research.


Learning Rank Functionals: An Empirical Study

arXiv.org Machine Learning

Ranking is a key aspect of many applications, such as information retrieval, question answering, ad placement and recommender systems. Learning to rank has the goal of estimating a ranking model automatically from training data. In practical settings, the task often reduces to estimating a rank functional of an object with respect to a query. In this paper, we investigate key issues in designing an effective learning to rank algorithm. These include data representation, the choice of rank functionals, the design of the loss function so that it is correlated with the rank metrics used in evaluation. For the loss function, we study three techniques: approximating the rank metric by a smooth function, decomposition of the loss into a weighted sum of element-wise losses and into a weighted sum of pairwise losses. We then present derivations of piecewise losses using the theory of high-order Markov chains and Markov random fields. In experiments, we evaluate these design aspects on two tasks: answer ranking in a Social Question Answering site, and Web Information Retrieval.


Feature Selection for Linear SVM with Provable Guarantees

arXiv.org Machine Learning

We give two provably accurate feature-selection techniques for the linear SVM. The algorithms run in deterministic and randomized time respectively. Our algorithms can be used in an unsupervised or supervised setting. The supervised approach is based on sampling features from support vectors. We prove that the margin in the feature space is preserved to within $\epsilon$-relative error of the margin in the full feature space in the worst-case. In the unsupervised setting, we also provide worst-case guarantees of the radius of the minimum enclosing ball, thereby ensuring comparable generalization as in the full feature space and resolving an open problem posed in Dasgupta et al. We present extensive experiments on real-world datasets to support our theory and to demonstrate that our method is competitive and often better than prior state-of-the-art, for which there are no known provable guarantees.