Graphical models provide a rich framework for summarizing the dependencies among variables. The graphical lasso approach attempts to learn the structure of a Gaussian graphical model (GGM) by maximizing the log likelihood of the data, subject to an l1 penalty on the elements of the inverse covariance matrix. Most algorithms for solving the graphical lasso problem do not scale to a very large number of variables. Furthermore, the learned network structure is hard to interpret. To overcome these challenges, we propose a novel GGM structure learning method that exploits the fact that for many real-world problems we have prior knowledge that certain edges are unlikely to be present. For example, in gene regulatory networks, a pair of genes that does not participate together in any of the cellular processes, typically referred to as pathways, is less likely to be connected. In computer vision applications in which each variable corresponds to a pixel, each variable is likely to be connected to the nearby variables. In this paper, we propose the pathway graphical lasso, which learns the structure of a GGM subject to pathway-based constraints. In order to solve this problem, we decompose the network into smaller parts, and use a message-passing algorithm in order to communicate among the subnetworks. Our algorithm has orders of magnitude improvement in run time compared to the state-of-the-art optimization methods for the graphical lasso problem that were modified to handle pathway-based constraints.

Supervised dimensionality reduction has shown great advantages in finding predictive subspaces. Previous methods rarely consider the popular maximum margin principle and are prone to overfitting to usually small training data, especially for those under the maximum likelihood framework. In this paper, we present a posterior-regularized Bayesian approach to combine Principal Component Analysis (PCA) with the max-margin learning. Based on the data augmentation idea for max-margin learning and the probabilistic interpretation of PCA, our method can automatically infer the weight and penalty parameter of max-margin learning machine, while finding the most appropriate PCA subspace simultaneously under the Bayesian framework. We develop a fast mean-field variational inference algorithm to approximate the posterior. Experimental results on various classification tasks show that our method outperforms a number of competitors.

Support Vector Machine (SVM) is a fundamental technique in machine learning. A long time challenge facing SVM is how to deal with outliers (caused by mislabeling), as they could make the classes in SVM nonseparable. Existing techniques, such as soft margin SVM, ν-SVM, and Core-SVM, can alleviate the problem to certain extent, but cannot completely resolve the issue. Recently, there are also techniques available for explicit outlier removal. But they suffer from high time complexity and cannot guarantee quality of solution. In this paper, we present a new combinatorial approach, called Random Gradient Descent Tree (or RGD-tree), to explicitly deal with outliers; this results in a new algorithm called RGD-SVM. Our technique yields provably good solution and can be efficiently implemented for practical purpose. The time and space complexities of our approach only linearly depend on the input size and the dimensionality of the space, which are significantly better than existing ones. Experiments on benchmark datasets suggest that our technique considerably outperforms several popular techniques in most of the cases.

Topic modeling is a powerful tool for uncovering latent structure in many domains, including medicine, finance, and vision. The goals for the model vary depending on the application: sometimes the discovered topics are used for prediction or another downstream task. In other cases, the content of the topic may be of intrinsic scientific interest. Unfortunately, even when one uses modern sparse techniques, discovered topics are often difficult to interpret due to the high dimensionality of the underlying space. To improve topic interpretability, we introduce Graph-Sparse LDA, a hierarchical topic model that uses knowledge of relationships between words (e.g., as encoded by an ontology). In our model, topics are summarized by a few latent concept-words from the underlying graph that explain the observed words. Graph-Sparse LDA recovers sparse, interpretable summaries on two real-world biomedical datasets while matching state-of-the-art prediction performance.

In recommendation systems, one is interested in the ranking of the predicted items as opposed to other losses such as the mean squared error. Although a variety of ways to evaluate rankings exist in the literature, here we focus on the Area Under the ROC Curve (AUC) as it widely used and has a strong theoretical underpinning. In practical recommendation, only items at the top of the ranked list are presented to the users. With this in mind we propose a class of objective functions which primarily represent a smooth surrogate for the real AUC, and in a special case we show how to prioritise the top of the list. This loss is differentiable and is optimised through a carefully designed stochastic gradient-descent-based algorithm which scales linearly with the size of the data. We mitigate sample bias present in the data by sampling observations according to a certain power-law based distribution. In addition, we provide computation results as to the efficacy of the proposed method using synthetic and real data.

Much of the focus on finding good representations in reinforcement learning has been on learning complex non-linear predictors of value. Policy gradient algorithms, which directly represent the policy, often need fewer parameters to learn good policies. However, they typically employ a fixed parametric representation that may not be sufficient for complex domains. This paper introduces the Policy Tree algorithm, which can learn an adaptive representation of policy in the form of a decision tree over different instantiations of a base policy. Policy gradient is used both to optimize the parameters and to grow the tree by choosing splits that enable the maximum local increase in the expected return of the policy. Experiments show that this algorithm can choose genuinely helpful splits and significantly improve upon the commonly used linear Gibbs softmax policy, which we choose as our base policy.

The Kalman Filter (KF) is pervasively used to control a vast array of consumer, health and defense products. By grouping sets of symmetric state variables, the Relational Kalman Filter (RKF) enables us to scale the exact KF for large-scale dynamic systems. In this paper, we provide a parameter learning algorithm for RKF, and a regrouping algorithm that prevents the degeneration of the relational structure for efficient filtering. The proposed algorithms significantly expand the applicability of the RKFs by solving the following questions: (1) how to learn parameters for RKF from partial observations; and (2) how to regroup the degenerated state variables by noisy real-world observations. To our knowledge, this is the first paper on learning parameters in relational continuous probabilistic models. We show that our new algorithms significantly improve the accuracy and the efficiency of filtering large-scale dynamic systems.

Spectral clustering is a fundamental technique in the field of data mining and information processing. Most existing spectral clustering algorithms integrate dimensionality reduction into the clustering process assisted by manifold learning in the original space. However, the manifold in reduced-dimensional subspace is likely to exhibit altered properties in contrast with the original space. Thus, applying manifold information obtained from the original space to the clustering process in a low-dimensional subspace is prone to inferior performance. Aiming to address this issue, we propose a novel convex algorithm that mines the manifold structure in the low-dimensional subspace. In addition, our unified learning process makes the manifold learning particularly tailored for the clustering. Compared with other related methods, the proposed algorithm results in more structured clustering result. To validate the efficacy of the proposed algorithm, we perform extensive experiments on several benchmark datasets in comparison with some state-of-the-art clustering approaches. The experimental results demonstrate that the proposed algorithm has quite promising clustering performance.

Training a structured prediction model involves performing several loss-augmented inference steps. Over the lifetime of the training, many of these inference problems, although different, share the same solution. We propose AI-DCD, an Amortized Inference framework for Dual Coordinate Descent method, an approximate learning algorithm, that accelerates the training process by exploiting this redundancy of solutions, without compromising the performance of the model. We show the efficacy of our method by training a structured SVM using dual coordinate descent for an entityrelation extraction task. Our method learns the same model as an exact training algorithm would, but call the inference engine only in 10% – 24% of the inference problems encountered during training. We observe similar gains on a multi-label classification task and with a Structured Perceptron model for the entity-relation task.

The global financial crisis occurred in 2008 and its contagion to other regions, as well as the long-lasting impact on different markets, show that it is increasingly important to understand the complicated coupling relationships across financial markets. This is indeed very difficult as complex hidden coupling relationships exist between different financial markets in various countries, which are very hard to model. The couplings involve interactions between homogeneous markets from various countries (we call intra-market coupling), interactions between heterogeneous markets (inter-market coupling) and interactions between current and past market behaviors (temporal coupling). Very limited work has been done towards modeling such complex couplings, whereas some existing methods predict market movement by simply aggregating indicators from various markets but ignoring the inbuilt couplings. As a result, these methods are highly sensitive to observations, and may often fail when financial indicators change slightly. In this paper, a coupled deep belief network is designed to accommodate the above three types of couplings across financial markets. With a deep-architecture model to capture the high-level coupled features, the proposed approach can infer market trends. Experimental results on data of stock and currency markets from three countries show that our approach outperforms other baselines, from both technical and business perspectives.