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Robust Feature-Sample Linear Discriminant Analysis for Brain Disorders Diagnosis

Neural Information Processing Systems

A wide spectrum of discriminative methods is increasingly used in diverse applications for classification or regression tasks. However, many existing discriminative methods assume that the input data is nearly noise-free, which limits their applications to solve real-world problems. Particularly for disease diagnosis, the data acquired by the neuroimaging devices are always prone to different sources of noise. Robust discriminative models are somewhat scarce and only a few attempts have been made to make them robust against noise or outliers. These methods focus on detecting either the sample-outliers or feature-noises. Moreover, they usually use unsupervised de-noising procedures, or separately de-noise the training and the testing data. All these factors may induce biases in the learning process, and thus limit its performance. In this paper, we propose a classification method based on the least-squares formulation of linear discriminant analysis, which simultaneously detects the sample-outliers and feature-noises. The proposed method operates under a semi-supervised setting, in which both labeled training and unlabeled testing data are incorporated to form the intrinsic geometry of the sample space. Therefore, the violating samples or feature values are identified as sample-outliers or feature-noises, respectively. We test our algorithm on one synthetic and two brain neurodegenerative databases (particularly for Parkinson's disease and Alzheimer's disease). The results demonstrate that our method outperforms all baseline and state-of-the-art methods, in terms of both accuracy and the area under the ROC curve.


Character-level Convolutional Networks for Text Classification

Neural Information Processing Systems

This article offers an empirical exploration on the use of character-level convolutional networks (ConvNets) for text classification. We constructed several large-scale datasets to show that character-level convolutional networks could achieve state-of-the-art or competitive results. Comparisons are offered against traditional models such as bag of words, n-grams and their TFIDF variants, and deep learning models such as word-based ConvNets and recurrent neural networks.


Training Restricted Boltzmann Machine via the ๏ฟผThouless-Anderson-Palmer free energy

Neural Information Processing Systems

Restricted Boltzmann machines are undirected neural networks which have been shown tobe effective in many applications, including serving as initializations fortraining deep multi-layer neural networks. One of the main reasons for their success is theexistence of efficient and practical stochastic algorithms, such as contrastive divergence,for unsupervised training. We propose an alternative deterministic iterative procedure based on an improved mean field method from statistical physics known as the Thouless-Anderson-Palmer approach. We demonstrate that our algorithm provides performance equal to, and sometimes superior to, persistent contrastive divergence, while also providing a clear and easy to evaluate objective function. We believe that this strategycan be easily generalized to other models as well as to more accurate higher-order approximations, paving the way for systematic improvements in training Boltzmann machineswith hidden units.


Learning Large-Scale Poisson DAG Models based on OverDispersion Scoring

Neural Information Processing Systems

In this paper, we address the question of identifiability and learning algorithms for large-scale Poisson Directed Acyclic Graphical (DAG) models. We define general Poisson DAG models as models where each node is a Poisson random variable with rate parameter depending on the values of the parents in the underlying DAG. First, we prove that Poisson DAG models are identifiable from observational data, and present a polynomial-time algorithm that learns the Poisson DAG model under suitable regularity conditions. The main idea behind our algorithm is based on overdispersion, in that variables that are conditionally Poisson are overdispersed relative to variables that are marginally Poisson. Our algorithms exploits overdispersion along with methods for learning sparse Poisson undirected graphical models for faster computation. We provide both theoretical guarantees and simulation results for both small and large-scale DAGs.


Tractable Bayesian Network Structure Learning with Bounded Vertex Cover Number

Neural Information Processing Systems

Both learning and inference tasks on Bayesian networks are NP-hard in general. Bounded tree-width Bayesian networks have recently received a lot of attention as a way to circumvent this complexity issue; however, while inference on bounded tree-width networks is tractable, the learning problem remains NP-hard even for tree-width~2. In this paper, we propose bounded vertex cover number Bayesian networks as an alternative to bounded tree-width networks. In particular, we show that both inference and learning can be done in polynomial time for any fixed vertex cover number bound $k$, in contrast to the general and bounded tree-width cases; on the other hand, we also show that learning problem is W[1]-hard in parameter $k$. Furthermore, we give an alternative way to learn bounded vertex cover number Bayesian networks using integer linear programming (ILP), and show this is feasible in practice.


M-Best-Diverse Labelings for Submodular Energies and Beyond

Neural Information Processing Systems

We consider the problem of finding M best diverse solutions of energy minimization problems for graphical models. Contrary to the sequential method of Batra et al., which greedily finds one solution after another, we infer all $M$ solutions jointly. It was shown recently that such jointly inferred labelings not only have smaller total energy but also qualitatively outperform the sequentially obtained ones. The only obstacle for using this new technique is the complexity of the corresponding inference problem, since it is considerably slower algorithm than the method of Batra et al. In this work we show that the joint inference of $M$ best diverse solutions can be formulated as a submodular energy minimization if the original MAP-inference problem is submodular, hence fast inference techniques can be used. In addition to the theoretical results we provide practical algorithms that outperform the current state-of-the art and can be used in both submodular and non-submodular case.


Texture Synthesis Using Convolutional Neural Networks

Neural Information Processing Systems

Here we introduce a new model of natural textures based on the feature spaces of convolutional neural networks optimised for object recognition. Samples from the model are of high perceptual quality demonstrating the generative power of neural networks trained in a purely discriminative fashion. Within the model, textures are represented by the correlations between feature maps in several layers of the network. We show that across layers the texture representations increasingly capture the statistical properties of natural images while making object information more and more explicit. The model provides a new tool to generate stimuli for neuroscience and might offer insights into the deep representations learned by convolutional neural networks.


Online F-Measure Optimization

Neural Information Processing Systems

The F-measure is an important and commonly used performance metric for binary prediction tasks. By combining precision and recall into a single score, it avoids disadvantages of simple metrics like the error rate, especially in cases of imbalanced class distributions. The problem of optimizing the F-measure, that is, of developing learning algorithms that perform optimally in the sense of this measure, has recently been tackled by several authors. In this paper, we study the problem of F-measure maximization in the setting of online learning. We propose an efficient online algorithm and provide a formal analysis of its convergence properties. Moreover, first experimental results are presented, showing that our method performs well in practice.


Attention-Based Models for Speech Recognition

Neural Information Processing Systems

Recurrent sequence generators conditioned on input data through an attention mechanism have recently shown very good performance on a range of tasks including machine translation, handwriting synthesis and image caption generation. We extend the attention-mechanism with features needed for speech recognition. We show that while an adaptation of the model used for machine translation reaches a competitive 18.6\% phoneme error rate (PER) on the TIMIT phoneme recognition task, it can only be applied to utterances which are roughly as long as the ones it was trained on. We offer a qualitative explanation of this failure and propose a novel and generic method of adding location-awareness to the attention mechanism to alleviate this issue. The new method yields a model that is robust to long inputs and achieves 18\% PER in single utterances and 20\% in 10-times longer (repeated) utterances. Finally, we propose a change to the attention mechanism that prevents it from concentrating too much on single frames, which further reduces PER to 17.6\% level.


Compressive spectral embedding: sidestepping the SVD

Neural Information Processing Systems

Spectral embedding based on the Singular Value Decomposition (SVD) is a widely used preprocessing step in many learning tasks, typically leading to dimensionality reduction by projecting onto a number of dominant singular vectors and rescaling the coordinate axes (by a predefined function of the singular value). However, the number of such vectors required to capture problem structure grows with problem size, and even partial SVD computation becomes a bottleneck. In this paper, we propose a low-complexity it compressive spectral embedding algorithm, which employs random projections and finite order polynomial expansions to compute approximations to SVD-based embedding. For an m times n matrix with T non-zeros, its time complexity is O((T+m+n)log(m+n)), and the embedding dimension is O(log(m+n)), both of which are independent of the number of singular vectors whose effect we wish to capture. To the best of our knowledge, this is the first work to circumvent this dependence on the number of singular vectors for general SVD-based embeddings. The key to sidestepping the SVD is the observation that, for downstream inference tasks such as clustering and classification, we are only interested in using the resulting embedding to evaluate pairwise similarity metrics derived from the euclidean norm, rather than capturing the effect of the underlying matrix on arbitrary vectors as a partial SVD tries to do. Our numerical results on network datasets demonstrate the efficacy of the proposed method, and motivate further exploration of its application to large-scale inference tasks.